Pairwise Alignments

Query, 223 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 225 a.a., two component transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  124 bits (312), Expect = 1e-33
 Identities = 83/225 (36%), Positives = 123/225 (54%), Gaps = 19/225 (8%)

Query: 10  RILLIEDDTLLGQGLRDYLHDHGYACEWVTQSQQ--VEKHWFSTDLVILDRQLHDGDSLK 67
           +ILL+EDD    + +     + G+  E  +   Q  +       DLVILDR L   D LK
Sbjct: 2   KILLVEDDATTTEYVVKGFAEQGHNIETASDGHQGLLLATSMQYDLVILDRMLPQLDGLK 61

Query: 68  HLPHWLMLKAL----PVIVLTAKIEVEQRIEGLKAGAKDYVLKPFSHQELLARIEAQLRP 123
            L     L+A     PV++L+A   V++R++GL+AG  DY+ KPF+  ELL R E +L  
Sbjct: 62  LLA---ALRATGNQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAE-KLMQ 117

Query: 124 LGSSV-----LSYADIVVDVANRSVLHNQTPVELKPKEFQLLLMLLQNPGRVYHRDELLN 178
            G+S      L   ++V+++  R V    + + L+PKEFQLL  L+++P +V  R  L  
Sbjct: 118 RGNSAPAQTELKVGELVMELLTRKVTLAGSEILLQPKEFQLLKYLMEHPNQVISRTLLFE 177

Query: 179 LIWGYQYFPTTRTVDNHILHLRQKLPQLD----IETLRGVGYRLK 219
            +W Y + P T  +D HI  LR+K  +L     IET+RG GYRL+
Sbjct: 178 AVWDYHFDPRTNVIDVHIAKLRRKFEELGFGELIETVRGAGYRLR 222