Pairwise Alignments

Query, 223 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 219 a.a., DNA-binding response regulator YgiX, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  112 bits (281), Expect = 4e-30
 Identities = 79/217 (36%), Positives = 119/217 (54%), Gaps = 11/217 (5%)

Query: 10  RILLIEDDTLLGQGLRDYLHDHGYACEWVTQSQQ----VEKHWFSTDLVILDRQLHDGDS 65
           RI+L+ED+ LL QG+   L   G   + ++   Q    ++   FS   ++LD  L DG+ 
Sbjct: 2   RIMLVEDNELLAQGICLSLAKMGMQVDHLSSYHQALVGIKNETFSA--IVLDLGLPDGNG 59

Query: 66  LKHLPHWLMLK-ALPVIVLTAKIEVEQRIEGLKAGAKDYVLKPFSHQELLARIEAQLR-- 122
              L  W     ++P IVLTA  + + ++E L  GA DY+ KPF  +EL ARI A +R  
Sbjct: 60  KDLLKAWRSQGVSIPTIVLTANTDFDTKLECLDVGADDYLGKPFDVRELAARIRAIVRRQ 119

Query: 123 -PLGSSVLSYADIVVDVANRSVLHNQTPVELKPKEFQLLLMLLQNPGRVYHRDELLNLIW 181
             L  + L+   + +D+  R V      V L  +EFQLLL L Q+ GRV  R++L  L +
Sbjct: 120 FGLDHNSLNIGALSIDLNTREVTFRDQNVSLSRREFQLLLELAQSAGRVLTRNQLEQLTY 179

Query: 182 GYQYFPTTRTVDNHILHLRQKLPQLDIETLRGVGYRL 218
           G+     + +++ HI HLR+KL    I+T+RG+GY L
Sbjct: 180 GWDEV-GSNSIEVHIHHLRKKLANELIKTVRGIGYTL 215