Pairwise Alignments

Query, 549 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 951 a.a., BarA sensory histidine kinase (= VarS = GacS) from Pseudomonas fluorescens FW300-N2E2

 Score =  115 bits (289), Expect = 6e-30
 Identities = 97/375 (25%), Positives = 179/375 (47%), Gaps = 44/375 (11%)

Query: 200 LSNVRSVITSLAVF--GMVSGALLGVWLLRTLSKPLAELVKSTTALEQGRLDHRISISGP 257
           L   RS+  SL +   G+    LL + + RT+++PL+++ ++   L+ G L+ R+   G 
Sbjct: 198 LRGYRSLFASLLLIAAGLCLTGLLALRMGRTINRPLSQIKQAVAQLKDGHLETRLPPLGS 257

Query: 258 DELKTLARHFNYMAQSLEQAQQKERMSRQLIEREVADRTQELAQALQTLE---------- 307
            EL  LA   N MA +L+ AQ++       ++  +   T+++ Q L+T+E          
Sbjct: 258 QELDELASGINRMASTLQNAQEE-------LQHSIDQATEDVRQNLETIEIQNIELDLAR 310

Query: 308 ----KAKHQQKEFFANVSHELRSPATAILGEAQITLRSRHNSDD-EYRQTLLRISESAEQ 362
               +A   + EF AN+SHE+R+P   ILG   +  +S       +Y  T   I +SA+ 
Sbjct: 311 KEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTPRQLDYLGT---IEKSADS 367

Query: 363 LAFRIEDLLMLIRHDERLFHPALTELLLGEIWQAVVRQASLLTHAQQVELTV----NTPA 418
           L   I ++L   + +            L ++ Q  +   +   HA+Q+EL      +TP 
Sbjct: 368 LLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPL 427

Query: 419 QGEWQTQLCYTDCDKLLMVIRILVDNALRYDPTQQPIGLNLELDEEAWRVQL----VDQG 474
                      D  +L  ++  LV NA+++      +   +  DE    VQL     D G
Sbjct: 428 S-------LVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEDEHEDSVQLRISIQDTG 480

Query: 475 IGIAEADLSVIFERYFRAENGKRYRPDGLGIGLTLAQSIVKQLDGEIRIESVLEQGTT-- 532
           IG++  D+  +F+ + +A+N    +P G G+GL +++ +V+Q+ GEI ++S   +G+   
Sbjct: 481 IGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLVEQMGGEIGVDSTPGEGSEFW 540

Query: 533 VTLTFPRGEEQDANL 547
           ++L  P+  +   +L
Sbjct: 541 ISLRLPKTRDDAEDL 555