Pairwise Alignments

Query, 549 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 1239 a.a., sensor histidine kinase from Pseudomonas fluorescens FW300-N2E2

 Score =  104 bits (259), Expect = 2e-26
 Identities = 101/378 (26%), Positives = 167/378 (44%), Gaps = 33/378 (8%)

Query: 194 EAALDALSNVRSVITSLAVFGMVSGALLGV--WLL-RTLSKPLAELVKSTTALEQGRLDH 250
           +A  DAL +    + +  V G V+  L G   W   R +++P+  L      L  G L+ 
Sbjct: 409 QARSDALVHNDRGMLATIVAGTVAILLAGAIAWSTSRFVAQPIVALASVMRRLAAGDLNA 468

Query: 251 RI-SISGPDELKTLARHFNYMAQS------LEQAQQKERMSRQL-IEREVADRTQ----- 297
            I S    DE+  + R      ++      LE   + ER   Q  +ER VA+RT      
Sbjct: 469 EIASAERGDEIGIMTRAVRVFQENALRIRVLEAEAEAERQQVQASLERMVAERTDALHHQ 528

Query: 298 ---------ELAQALQTLEKAKHQQKEFFANVSHELRSPATAILGEAQITLRSRHNSDDE 348
                    EL QA    E A   + +F A VSHELR+P T IL   +  LR+      +
Sbjct: 529 TEVLEAQAIELIQARNQAETANQAKSDFVATVSHELRTPLTLILAPLE-QLRAATTPPAD 587

Query: 349 YRQTLLRISESAEQLAFRIEDLLMLIRHDERLFHPALTELLLGEIWQAVVRQASLLTHAQ 408
           +   + R   +A +L  R+ D+L   + +   F      + L +    +   A+++   +
Sbjct: 588 WHVQVDRAQRNALRLMNRVNDILDFSKAEAGKFELCPMPVDLNKTVGVLAEDAAMVAEGK 647

Query: 409 QVELTVNT-PAQGEWQTQLCYTDCDKLLMVIRILVDNALRYDPTQQPIGLNLE-LDEEAW 466
              LT +  PA G       + D      ++  LV NA+++ P    + + +  +D E +
Sbjct: 648 GCTLTCSIDPALGT-----VFLDPRHFEKILLNLVSNAIKFTPAGGTVHVAVAAIDGERF 702

Query: 467 RVQLVDQGIGIAEADLSVIFERYFRAENGKRYRPDGLGIGLTLAQSIVKQLDGEIRIESV 526
            + + D GIGIA   L ++F+R+ + +N       G GIGL L + +VK + GE+ + S 
Sbjct: 703 ELAVQDSGIGIAPDKLPLLFQRFSQIDNSATRHYSGTGIGLALVKDLVKLMGGEVGVNSE 762

Query: 527 LEQGTTVTLTFPRGEEQD 544
             +G+   +  P G EQD
Sbjct: 763 PGRGSCFFVRLPLGAEQD 780



 Score = 41.2 bits (95), Expect = 2e-07
 Identities = 89/445 (20%), Positives = 169/445 (37%), Gaps = 54/445 (12%)

Query: 108  EQAQQHSLTVQDFSEINQQIKVISLFETNFASLKKALRS-WEIAKITDDDERWLLLSQSF 166
            EQ  +H+L          ++ V+       + L++ LR  + +A  TD ++ W LL +  
Sbjct: 827  EQHSEHAL--------RSKVLVVDDSPEMLSYLRELLRDDYSVATATDGEQAWALLQRRP 878

Query: 167  DRVDDTDLRQLLTQAISLQQQRTSRYEEAALDALSNVRSVITSLAVFGMVSGALLGVWLL 226
              V  +D+         L  +  +    A L  +       +   V G+ SGA    ++ 
Sbjct: 879  IDVVVSDVMMPKLDGFGLTARIKASAGFAHLPVILVTARGGSEACVSGLESGA--DDYIA 936

Query: 227  RTLSKPLAELVKSTTALEQGRLDHRISI----SGPDELKTLARHFNYMAQSLEQAQQKER 282
            +  S PL    +   AL  G++   ++     +G  E+ T   H      ++        
Sbjct: 937  KPFS-PLELKARVRAALRMGQVQTELNAKSRQAGMAEIATTVLH------NVGNVLNSVN 989

Query: 283  MSRQLIEREV-ADRTQELAQALQTLEKAKHQQKEFFANVSHELRSPATAILGEAQITLRS 341
            +S +L+  ++   + Q L +  Q L +  H   +F     H+ +     +L  A++    
Sbjct: 990  VSAELVSSQMRTSKAQGLGKVAQLLSEHVHDLNDFLTR-DHKGKMLPDYLLRLAKVVTEE 1048

Query: 342  RHNSDDEYRQTLLRISESAEQLAFRIEDLLMLIRHDERL-FHPALTELL-LGEIWQAVVR 399
            +             I E   QL   I+ +  ++   +      ++ E + + E+    +R
Sbjct: 1049 QQG-----------IIEELGQLTKGIDHIKTIVAAQQSYAVAVSIVETVPVAELIDDALR 1097

Query: 400  QASLLTHAQQVELTVNTPAQGEWQTQLCYTDCDKLLMVIRILVDNALR----YDPTQQPI 455
             ++ L   Q+V +  N          L   D  ++L+++  L+ NA +           +
Sbjct: 1098 MSAGLLARQEVTMVKNIA-----DLPLLALDRHRVLLILVNLIGNAKQALDGVIDRSPCV 1152

Query: 456  GLNLEL-DEEAWRVQLVDQGIGIAEADLSVIFERYFRAENGKRYRPDGLGIGLTLAQSIV 514
              ++ L D    R+ + D G GIA   L  IF   F        R DG G GL       
Sbjct: 1153 TFSVSLVDGAVLRITVADNGNGIAPEHLKRIFTHGFTT------RKDGHGFGLHSCALAA 1206

Query: 515  KQLDGEIRIES-VLEQGTTVTLTFP 538
            +++ G + + S  + QG T TL  P
Sbjct: 1207 QEMGGSLTVHSDGVGQGATFTLDIP 1231