Pairwise Alignments

Query, 549 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 933 a.a., hybrid sensory histidine kinase BarA (RefSeq) from Shewanella loihica PV-4

 Score = 96.7 bits (239), Expect = 4e-24
 Identities = 88/345 (25%), Positives = 163/345 (47%), Gaps = 26/345 (7%)

Query: 210 LAVFGMVSGALLGVWLLRTLSKPLAELVKSTTALEQGRLDHRISISGPDELKTLARHFNY 269
           + + G+    L    L++ ++ P+ E+V+    + +G+LD R+  +   EL  L R  N 
Sbjct: 193 IVLIGVQLNLLFTFRLVKNVTHPITEMVRVVAKIREGKLDTRVDGNLIGELDLLKRGINA 252

Query: 270 MAQSLEQAQQKERMSRQLIEREVADRTQELAQA-LQTLE---------KAKHQQKEFFAN 319
           MA SL +  ++    +Q I++  +D  + L Q  +Q +E         +A   + EF AN
Sbjct: 253 MAGSLSEYHEE---MQQNIDQATSDLRETLEQIEIQNVELDLAKKRALEASRIKSEFLAN 309

Query: 320 VSHELRSPATAILGEAQITLRSR-HNSDDEYRQTLLRISESAEQLAFRIEDLLMLIRHDE 378
           +SHELR+P   ++G A+  L++  H S  +Y +T   I +SA  L   I D+L   + + 
Sbjct: 310 MSHELRTPLNGVIGFAKQLLKTPLHASQQDYIKT---IEKSATNLLGIINDILDFSKLEA 366

Query: 379 RLFHPALTELLLGEIWQAVVRQASLLTHAQQVELTVNTPAQGEWQTQLCYTDCDKLLMVI 438
                      L E+    +   +     + +EL V+              D  ++  VI
Sbjct: 367 GKMELENMPFALREVIDDTISLLANSAKEKDLELVVDIEPSINDNVS---GDALRVSQVI 423

Query: 439 RILVDNALRYDPTQQPIGLNLEL-DEEAWRV----QLVDQGIGIAEADLSVIFERYFRAE 493
             LV NA+++  +   + L + L  EEA +V    ++ D GIGI +   + +F+ + +A+
Sbjct: 424 TNLVGNAIKFTDSGS-VHLKMRLTSEEAEKVNVRCEITDTGIGIDKPHQAQLFQAFGQAD 482

Query: 494 NGKRYRPDGLGIGLTLAQSIVKQLDGEIRIESVLEQGTTVTLTFP 538
           +    R  G G+GL + + ++ ++ G+I   S   +G+T   T P
Sbjct: 483 SSISRRFGGTGLGLIITKRLINRMGGQIGCISAPGKGSTFWFTLP 527