Pairwise Alignments

Query, 549 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 935 a.a., hybrid sensory histidine kinase BarA (RefSeq) from Shewanella oneidensis MR-1

 Score =  103 bits (258), Expect = 2e-26
 Identities = 90/346 (26%), Positives = 161/346 (46%), Gaps = 24/346 (6%)

Query: 210 LAVFGMVSGALLGVWLLRTLSKPLAELVKSTTALEQGRLDHRISISGPDELKTLARHFNY 269
           + + G+    L    L++ +++P+ E+V+    + +G+LD R+  +   EL  L R  N 
Sbjct: 191 IVLIGVQLNLLFTFRLVKNVTQPITEMVRVVAKIREGKLDARLQGNLIGELDLLKRGINA 250

Query: 270 MAQSLEQAQQKERMSRQLIEREVADRTQELAQA-LQTLE---------KAKHQQKEFFAN 319
           MA SL +   +    +Q I++  +D  + L Q  +Q +E         +A   + EF AN
Sbjct: 251 MAGSLSEYHDE---MQQNIDQATSDLRETLEQIEIQNVELDLAKKRALEASRIKSEFLAN 307

Query: 320 VSHELRSPATAILGEA-QITLRSRHNSDDEYRQTLLRISESAEQLAFRIEDLLMLIRHDE 378
           +SHELR+P   ++G A Q+     H+S  +Y  T+ R   SA  L   I D+L   + + 
Sbjct: 308 MSHELRTPLNGVIGFARQLVKTPLHSSQVDYINTIER---SATNLLAIINDILDFSKLEA 364

Query: 379 RLFHPALTELLLGEIWQAVVRQASLLTHAQQVELTVNTPAQGEWQTQLCYTDCDKLLMVI 438
                      L E     +   S    A+ +EL V+              D  ++  +I
Sbjct: 365 GKMVLESMPFGLRETLGETITLISGSAQAKGLELVVDIAPNVPDNVN---GDSMRVCQII 421

Query: 439 RILVDNALRYDPTQQ---PIGLNLELDEEA-WRVQLVDQGIGIAEADLSVIFERYFRAEN 494
             LV NA+++  +      + L  + DE+   R  ++D GIGI E+    +F+ + +A++
Sbjct: 422 NNLVGNAIKFTDSGSVLVKLELQAQTDEQVVLRCDVIDTGIGIDESQQDFLFQAFGQADS 481

Query: 495 GKRYRPDGLGIGLTLAQSIVKQLDGEIRIESVLEQGTTVTLTFPRG 540
               R  G G+GL + + +V Q+ G+I   S +++G+    T P G
Sbjct: 482 SISRRFGGTGLGLVITKRLVNQMGGQIGFTSSVDKGSNFWFTLPLG 527