Pairwise Alignments

Query, 659 a.a., TonB-dependent siderophore receptor from Vibrio cholerae E7946 ATCC 55056

Subject, 655 a.a., ligand-gated channel protein from Pseudomonas fluorescens FW300-N2C3

 Score = 71.2 bits (173), Expect = 1e-16
 Identities = 135/590 (22%), Positives = 217/590 (36%), Gaps = 99/590 (16%)

Query: 8   ALWLAITAAMSANAVAEQKATPEQENVVIWGT----KVSSSSESLTTDD---LSLKQADH 60
           AL  +   A+  +A A +      ++VV+  +    +V  +  S+T  D   L  K    
Sbjct: 17  ALAASAAGALCTSAQAAEPQAMTLDDVVVTASGYEQRVEDAPASVTVIDGETLRRKSYRD 76

Query: 61  MSDLLRDIPGVDVGGTHSVNQRINIRGLGETNLDIRLDGASQHANMFHHIGNLTLNPDIL 120
           + D +RD+ GV V G  +    I+IRG+      I +DG  Q A      GN       +
Sbjct: 77  LGDAVRDVEGVTVNGGANETD-ISIRGMPADYTLILVDGKRQSARESRVNGNSGYEQSFV 135

Query: 121 KSAD----VQVGNNSVTQ----SGLGGSVYFETKNAKDLLVGGEQFGARIFGGYASNDN- 171
             A     ++V    ++       +GG +   T+          Q+G  +   Y++  + 
Sbjct: 136 PPAAAIERIEVVRGPMSSLYGSDAIGGVINVITRKVSP------QWGGSVSYDYSARQHS 189

Query: 172 -----QQGSLTVYGQLSET-VDAMVYGQGISRDNFEDGAGKETFGVKGDTYNVLAKVGFE 225
                +Q    + G L E  +   V+G+ + R   +D      F  + D  ++ A++ F 
Sbjct: 190 DQGNARQTQFYLNGPLHEDFLGLQVWGRYLDRQADDDIEQTNGFS-QADHRDLTARLAFT 248

Query: 226 PAVGHRFQVSYDVYRDQGDYSPRPDMAGSANLGLSKNRLVPTHYDRDT------ITGSYE 279
           P V H      D+  + G    +     SAN    +      H+           T    
Sbjct: 249 PTVDH------DILLEAGATRLKNGDGISANWATREQENNRDHWSLSHQGRWGWATSDIA 302

Query: 280 LKQD--KHRGKVTLYSSQTEI-DRDESVMAGVWPGNRLSRNTATNRNVGINALFQSDYEL 336
           L Q+     GK T   +QT+I  R   V   V+    +     T  NV    +  ++ EL
Sbjct: 303 LSQETSSREGKAT--PAQTDIYGRKPEVKNTVFDAKLV---VPTTHNVSTVGMQWNESEL 357

Query: 337 AAHRNQVSYGMDYVDQTSKATYGSTPFMEESAVSTAVFAENKLYVNDVWSLTAGLRFDDF 396
                 +   +DY               E S +  AVFAEN+  V D ++LT GLR DD 
Sbjct: 358 TDWNQGLGDRVDY---------------EFSVLQKAVFAENEWSVTDNFALTTGLRLDDH 402

Query: 397 KRKAMTGTKDFDEVTWSLGTEWDVTSDWTLFANARSLFKGPELLETFVRYQDQARLADN- 455
           ++     +     V       W  T +WTL       FK PEL       +D A L  N 
Sbjct: 403 EQYGTHASPRIYGV-------WRATDNWTLKGGIARGFKAPELRAV---VKDYAYLRRNR 452

Query: 456 --------IKPETGLNTQGGVRFDKTYGDHFVGANFTLFKTQIDDHIRTS------NSYL 501
                   +KPET  N +    +        + A  T+F     D + T       N Y+
Sbjct: 453 FVMLGNPDLKPETSTNYEFSALWSNR---DDLSAGATVFYNDFQDKLSTVTTDERWNGYI 509

Query: 502 IS---NVGDMEIKGFELSTTYAYQAA---SAKLSYAHSDANDVTNGGPML 545
           +    N+    I+G EL+  +   A+    A  +Y  S+     N G  L
Sbjct: 510 VMDRVNIDKAVIQGVELTGQWDINASVLFKANYTYTDSEQKSGANAGAPL 559