Pairwise Alignments

Query, 358 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 342 a.a., Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain from Pseudomonas fluorescens FW300-N2E2

 Score = 60.5 bits (145), Expect = 6e-14
 Identities = 34/110 (30%), Positives = 60/110 (54%), Gaps = 3/110 (2%)

Query: 244 SQHQEGQSEQWINQLLHYIDQHLHEEICLEQLAERHAMSVSNLQRKFKTRLNMTIAHYIR 303
           SQH  G +   +++L  +I +HLH ++ +E LA++ + SV  L R F+  L  T A Y+ 
Sbjct: 227 SQHVPGSN---LDELCLWIAEHLHSDLTVEILADKFSTSVRTLIRLFQRELQTTPAKYVE 283

Query: 304 HRRLQLARQQLERGLVTITEAAYEAGYLHPSNFTAAFKKAFGISPQAFVE 353
             R++ A + +E G  ++ E A  +GY        AF +  G+SP+ + +
Sbjct: 284 DVRIEAACRSIELGGRSMEEVARRSGYHSVDVLRKAFVRRIGVSPKEYAQ 333