Pairwise Alignments

Query, 548 a.a., methyl-accepting chemotaxis protein HlyB from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., Methyl-accepting chemotaxis protein from Pseudomonas fluorescens FW300-N2E2

 Score =  216 bits (549), Expect = 3e-60
 Identities = 132/349 (37%), Positives = 203/349 (58%), Gaps = 1/349 (0%)

Query: 200 VIIAAGLIISFITSLVIITNLRSRVAYLKDRMSSAAANLSLRTRLELDGNDELCDIGKSF 259
           ++IA   II+ +  L+ +  ++  +   +     A     L  RL + G+DE   +G SF
Sbjct: 279 MVIAVVFIIALLGMLIRVL-MQPLLTMGRAMHDIAEGEGDLTRRLVIHGHDEFGALGTSF 337

Query: 260 NAFIDKVHHSIEEVAENSKELATMASSVSQRAHMTQSNCASQRDRTVQVATAIHELGATV 319
           N F++++H SI EVA  + ++  +A  V   ++ +  N   Q  RT  VA AI++LGA  
Sbjct: 338 NRFVERIHTSIREVASATGQVNEVALRVVSASNSSMFNSDQQASRTSSVAAAINQLGAAA 397

Query: 320 SEIASNAAMAADVAKQATLHSGEGKKVVGEVQNRIQTLVNELDNATQVVSSLATQINGIS 379
            EIA NAA+A+  +  A   + +G++VV +    +Q L  ++ ++   + +L +    I 
Sbjct: 398 QEIAQNAALASQHSSDARSLAEDGQQVVDKTIAAMQQLSAKISDSCGNIETLNSNTVNIG 457

Query: 380 STLDTIRSISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRSAASTEEIQQVIN 439
             L+ I SIS+QTNLLALNAAIEAARAGE GRGFAVVADEVR LA R+  S +++Q++I 
Sbjct: 458 QILEVITSISQQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRTQDSAQQVQKMIE 517

Query: 440 RLQTESTRAVEAMEKGRSQSDVVVEFSAKANQSLTEINSQIDQINDQNIQVATATEEQST 499
            LQ  +  AV  M   + QS+  V  + +A + L  +  +I +I+  N  VATATEEQ+ 
Sbjct: 518 ELQVGAREAVLTMTDSQRQSESSVGIANQAGERLGSVTQRIGEIDGMNQSVATATEEQTA 577

Query: 500 VVEDINRNVEDINQLTTETSHVADELSRASASLQRLSSQLDKLVGSFEL 548
           VVE IN ++ +IN L  E         RA A L++ +++L +LVGSF +
Sbjct: 578 VVESINVDITEINTLNQEGVENLQATLRACADLEQQAARLKQLVGSFRI 626



 Score = 28.9 bits (63), Expect = 6e-04
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 7/74 (9%)

Query: 5  KFSLKWMLAIAVAIPAIALLFVAFTSLNTMSVMQAQSNSLYANTAAPMRAMAEATSRIPR 64
          KFS K +LA A+ +      F+ F           Q  SL A+T   M+ +   TSR  +
Sbjct: 2  KFSHKILLAAALVVAVAFACFILFNDYR-------QRQSLNASTETSMQELGSLTSRNIQ 54

Query: 65 MRVGIDMMLLQETA 78
            V   + LLQ  A
Sbjct: 55 TWVDGRIQLLQSLA 68