Pairwise Alignments

Query, 548 a.a., methyl-accepting chemotaxis protein HlyB from Vibrio cholerae E7946 ATCC 55056

Subject, 544 a.a., Methyl-accepting chemotaxis protein from Pseudomonas fluorescens FW300-N2E2

 Score =  238 bits (608), Expect = 3e-67
 Identities = 172/544 (31%), Positives = 285/544 (52%), Gaps = 18/544 (3%)

Query: 9   KWMLAIAVAIPAIALLFVAFTSLNTMSVMQAQSNSLYANTAAPMRAMAEATSRIPRMRVG 68
           +W + + +A  A+ L+ + +  +  +  +   S  L       +  +  A   + +  V 
Sbjct: 11  RWKITLPIAFLAVLLVLMGWAGMRGIGQVTESSTQLTKRYLPAISLLLNADRDLYQAFVA 70

Query: 69  IDMMLLQETALKDAKGVLKRVEEARTEDIPEMRQ--AMQVAVDSQVNPELKEQARKLQAR 126
            +  LL   A +  K +     E   +    +++  AMQ   ++Q    L  Q      +
Sbjct: 71  -ERSLLDGHANEHLKALSTSHGENAKQAYDRVQKYAAMQPGAEAQA---LVSQFNDSFGK 126

Query: 127 FEQMVREELEPMLQAFANNDMTTAQNIYRDKYAPTYGEMRKQANQILDTLLQQAEQQNHA 186
           + Q+ R  LE      +  D   A  +        +  MR   +++ +     + ++  A
Sbjct: 127 WMQVSRRVLE-----LSVGDPQGASALSFGDSERLFETMRDSIDKLGELEDAASHREGDA 181

Query: 187 SVESFEAGRTKQMVIIAAGLI----ISFITSLVIITNLRSRVAYLKDRMSSAAANLSLRT 242
           ++E+ E     Q VI+  GL+    +  +  LV+++ +R R+ +  ++++    +L  + 
Sbjct: 182 AIENGETVGVHQGVILLVGLLGCILVLVVLPLVVLSPMR-RLLHRVEQIAEGGGDL--KG 238

Query: 243 RLELDGNDELCDIGKSFNAFIDKVHHSIEEVAENSKELATMASSVSQRAHMTQSNCASQR 302
           RLE+   DEL  +G +FN F+DK+   I EV   + E+ + A +++  A       +S+ 
Sbjct: 239 RLEVRSADELGQLGSAFNRFLDKLQPLIAEVGRVTGEVDSAARAMADMAATNDRLISSEH 298

Query: 303 DRTVQVATAIHELGATVSEIASNAAMAADVAKQATLHSGEGKKVVGEVQNRIQTLVNELD 362
               QV+TA  ++ A V E+A NAA A+  A+QA+  S +G +VV      I+ L  E++
Sbjct: 299 AALDQVSTAATQMSAAVHEVAHNAANASGAAQQASSQSRDGAEVVSSTIESIRQLAQEVE 358

Query: 363 NATQVVSSLATQINGISSTLDTIRSISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRT 422
           +A+  + +LA + + I + L+ IR I+EQTNLLALNAAIEAARAGEQGRGFAVVADEVR 
Sbjct: 359 SASGTIEALAQETSSIGAVLEVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRA 418

Query: 423 LASRSAASTEEIQQVINRLQTESTRAVEAMEKGRSQSDVVVEFSAKANQSLTEINSQIDQ 482
           LA+R+  ST++IQ  I RLQ+   +AV+AM  G +++   VE +A  +Q L+     I Q
Sbjct: 419 LAARTQDSTKDIQVRIERLQSGVAKAVQAMHVGSTKARDSVERAAGVDQVLSGTGGSIQQ 478

Query: 483 INDQNIQVATATEEQSTVVEDINRNVEDINQLTTETSHVADELSRASASLQRLSSQLDKL 542
           IND   Q+A+A EEQS+V E+I RN+ DI  L+ E +  + +   AS  L  LS  L +L
Sbjct: 479 INDMAAQIASACEEQSSVTEEIARNISDIRDLSNEAAANSAQSMHASQQLSSLSRNLAEL 538

Query: 543 VGSF 546
            G F
Sbjct: 539 TGRF 542