Pairwise Alignments

Query, 548 a.a., methyl-accepting chemotaxis protein HlyB from Vibrio cholerae E7946 ATCC 55056

Subject, 647 a.a., Methyl-accepting chemotaxis protein from Pseudomonas fluorescens FW300-N2E2

 Score =  205 bits (522), Expect = 4e-57
 Identities = 123/310 (39%), Positives = 170/310 (54%), Gaps = 6/310 (1%)

Query: 240 LRTRLELDGNDELCDIGKSFNAFIDKVHHSIEEVAENSKELATMASSVSQRAHMTQSNCA 299
           L  +L + G DE   +   FN F+  +   ++ +   S +L T A+  S  A        
Sbjct: 339 LTRKLTVQGKDETATLAGWFNQFLGMIAQLMQRIGSASSDLQTAAADTSHVAQNMNDAAG 398

Query: 300 SQRDRTVQVATAIHELGATVSEIASNAAMAADVAKQATLHSGEGKKVVGEVQNRIQTLVN 359
            QR     V+TA +E+ AT +E+A + + AA  A +      +G+  +GE    +  L +
Sbjct: 399 RQRQAVELVSTAFNEMVATANEVARSCSQAASSADEGYRDVHDGQHHIGEATGSVMKLSD 458

Query: 360 ELDNATQVVSSLATQINGISSTLDTIRSISEQTNLLALNAAIEAARAGEQGRGFAVVADE 419
           +L  +TQ + +L      I++ LDTIRSI+EQTNLLALNAAIEAARAG+QGRGFAVVADE
Sbjct: 459 DLQKSTQTMQALEQDSKNINTILDTIRSIAEQTNLLALNAAIEAARAGDQGRGFAVVADE 518

Query: 420 VRTLASRSAASTEEIQQVINRLQTESTRAVEAMEKGRSQSDVVVEFSAKANQSLTEINSQ 479
           VR LA R+A ST EI  ++  L   +    + M+     S   VE   +A  S  +I + 
Sbjct: 519 VRALARRTADSTGEIDSLLGNLARRTQEVTQQMQSSLQVSQTSVERIQQARDSFDKIRNS 578

Query: 480 IDQINDQNIQVATATEEQSTVVEDINRNVEDIN---QLTTETSHVADELSRASASLQRLS 536
           +D I DQN Q+ATA EEQ  V EDINR++  I+   QL  E +H A      S  L  +S
Sbjct: 579 VDSIRDQNTQIATAAEEQHQVAEDINRHIAQIHADAQLVEEFAHSA---QTGSGRLTDIS 635

Query: 537 SQLDKLVGSF 546
            QL  LVG F
Sbjct: 636 GQLKGLVGRF 645



 Score = 35.4 bits (80), Expect = 7e-06
 Identities = 42/199 (21%), Positives = 79/199 (39%), Gaps = 42/199 (21%)

Query: 167 KQANQILDTLLQQAEQQN----HASVESFEAGRTKQMVIIAAGLIISFITSLVIITNLRS 222
           K  N ILDT+   AEQ N    +A++E+  AG   +   + A  + +          L  
Sbjct: 475 KNINTILDTIRSIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRA----------LAR 524

Query: 223 RVAYLKDRMSSAAANLSLRTRLELDGNDELCDIGKSFNAFIDKVHHSIEEVAENSKELAT 282
           R A     + S   NL+ RT+          ++ +   + +     S+E + +       
Sbjct: 525 RTADSTGEIDSLLGNLARRTQ----------EVTQQMQSSLQVSQTSVERIQQARDSFDK 574

Query: 283 MASSVSQRAHMTQSNCASQRDRTVQVATAIHE-------LGATVSEIASNAAMAADVAKQ 335
           + +SV            S RD+  Q+ATA  E       +   +++I ++A +  + A  
Sbjct: 575 IRNSVD-----------SIRDQNTQIATAAEEQHQVAEDINRHIAQIHADAQLVEEFAHS 623

Query: 336 ATLHSGEGKKVVGEVQNRI 354
           A   SG    + G+++  +
Sbjct: 624 AQTGSGRLTDISGQLKGLV 642