Pairwise Alignments

Query, 548 a.a., methyl-accepting chemotaxis protein HlyB from Vibrio cholerae E7946 ATCC 55056

Subject, 544 a.a., chemotaxis protein from Pseudomonas fluorescens FW300-N2C3

 Score =  243 bits (621), Expect = 1e-68
 Identities = 172/552 (31%), Positives = 289/552 (52%), Gaps = 34/552 (6%)

Query: 9   KWMLAIAVAIPAIALLFVAFTSLNTMSVMQAQSNSLYANTAAPMRAMAEATSRIPRMRVG 68
           +W + + +A  A+ L+ + +T +  +  +   S  L       +  +  A   + +  V 
Sbjct: 11  RWKITLPIAFLALLLVLMGWTGMRGIGQVTESSTQLTKRNLPAISLLLNADRDLYQAFVA 70

Query: 69  IDMML----------LQETALKDAKGVLKRVEEARTEDIPEMRQAMQVAVDSQVNPELKE 118
              +L          L  +  ++AK    RV++          QA+     SQ N    +
Sbjct: 71  ERSLLDGHANEHIQALSTSHSENAKQAYDRVQKYAAMQPGAEAQALV----SQFNDSFGK 126

Query: 119 QARKLQARFEQMVREELEPMLQAFANNDMTTAQNIYRDKYAPTYGEMRKQANQILDTLLQ 178
             +  +   EQ VR+       +F +++               +  MR   +++ D    
Sbjct: 127 WMQVSRRVVEQSVRDPQGASALSFGDSERL-------------FETMRDSIDKLGDLEDA 173

Query: 179 QAEQQNHASVESFEAGRTKQMVIIAAGL----IISFITSLVIITNLRSRVAYLKDRMSSA 234
            + ++  A++E+ EA   +Q  I+  GL    ++  +  LV+++ +R R+ +  ++++  
Sbjct: 174 ASHREGDAAIENGEAVGVQQGAILLIGLFCCVLVLTVLPLVVLSPMR-RLLHRVEQIAEG 232

Query: 235 AANLSLRTRLELDGNDELCDIGKSFNAFIDKVHHSIEEVAENSKELATMASSVSQRAHMT 294
             +L  + RLE+   DEL  +G +FN F+DK+   I EV   + E+ + A +++  A   
Sbjct: 233 GGDL--KGRLEVRSADELGQLGGAFNRFLDKLQPLIAEVGRVTGEVDSAARAMADMAATN 290

Query: 295 QSNCASQRDRTVQVATAIHELGATVSEIASNAAMAADVAKQATLHSGEGKKVVGEVQNRI 354
               +S+     QV+TA  ++ A V E+A NA  A+D A+QA+  S +G +VV      I
Sbjct: 291 DRLISSEHAALDQVSTAATQMSAAVHEVAHNAVSASDAAQQASSQSRDGAEVVSSTIESI 350

Query: 355 QTLVNELDNATQVVSSLATQINGISSTLDTIRSISEQTNLLALNAAIEAARAGEQGRGFA 414
           + L  E+++A+  + +LA + + I + L+ IR I+EQTNLLALNAAIEAARAGEQGRGFA
Sbjct: 351 RQLAQEVESASGTIEALAQETSSIGAVLEVIRGIAEQTNLLALNAAIEAARAGEQGRGFA 410

Query: 415 VVADEVRTLASRSAASTEEIQQVINRLQTESTRAVEAMEKGRSQSDVVVEFSAKANQSLT 474
           VVADEVR LA+R+  ST++IQ  I RLQ+   +AV+AM+ G S++   VE +A  ++ L+
Sbjct: 411 VVADEVRALAARTQDSTKDIQVRIERLQSGVAKAVQAMQVGSSKARDSVERAAGVDEVLS 470

Query: 475 EINSQIDQINDQNIQVATATEEQSTVVEDINRNVEDINQLTTETSHVADELSRASASLQR 534
             +  I +IND   Q+A A EEQS+V E+I RN+ DI  L+ E +  + +  +AS  L  
Sbjct: 471 GTSGSIQRINDMAAQIANACEEQSSVTEEIARNISDIRDLSNEAASNSAQSMQASQQLSS 530

Query: 535 LSSQLDKLVGSF 546
           LS  L +L G F
Sbjct: 531 LSRNLAELTGRF 542