Pairwise Alignments

Query, 548 a.a., methyl-accepting chemotaxis protein HlyB from Vibrio cholerae E7946 ATCC 55056

Subject, 709 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

 Score =  241 bits (616), Expect = 5e-68
 Identities = 146/350 (41%), Positives = 208/350 (59%), Gaps = 3/350 (0%)

Query: 199 MVIIAAGLIISFITSLVIITNLRSRVAYLKDRMSSAAANLSLRTRLELDGNDELCDIGKS 258
           M+I  AGL+  ++ S  I   LR  V  L D +S    +L+   RL +D  +EL  I   
Sbjct: 363 MLIAFAGLLAIWLISRRITRPLRDMVVML-DNISQGEGDLT--QRLNIDSRNELGQIAAG 419

Query: 259 FNAFIDKVHHSIEEVAENSKELATMASSVSQRAHMTQSNCASQRDRTVQVATAIHELGAT 318
           FNAF+ ++   I EV  + ++++  +   +  A  T     +Q      VATA+HE+ AT
Sbjct: 420 FNAFLARLQGMISEVVSSVQKVSDASEHTADIAIRTDKGVQTQLAEIELVATAVHEMTAT 479

Query: 319 VSEIASNAAMAADVAKQATLHSGEGKKVVGEVQNRIQTLVNELDNATQVVSSLATQINGI 378
             ++A NA  AA+ A  A   + +G+ +V +    I  L +E+  A  VV +LA     I
Sbjct: 480 AQDVARNATQAAEAANNADRAANQGRHIVQDTGATIAELASEIGRAVDVVQTLARDSENI 539

Query: 379 SSTLDTIRSISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRSAASTEEIQQVI 438
            + L TIRSI+EQTNLLALNAAIEAARAGEQGRGFAVVADEVR LA ++  +T EIQQ+I
Sbjct: 540 DAILVTIRSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAQKTQQATGEIQQMI 599

Query: 439 NRLQTESTRAVEAMEKGRSQSDVVVEFSAKANQSLTEINSQIDQINDQNIQVATATEEQS 498
            +LQ  +   V+ ME+ ++++   VE +  A ++L  I   +  IND N Q+A+A EEQS
Sbjct: 600 QQLQGGTRDVVQVMEQSQNRTRRSVEQADAAAEALQAITQAVSLINDMNNQIASAAEEQS 659

Query: 499 TVVEDINRNVEDINQLTTETSHVADELSRASASLQRLSSQLDKLVGSFEL 548
            V EDINRNV +I Q+  + +  ADE S+ASA L RL+ Q  +L+  F +
Sbjct: 660 AVAEDINRNVTNIGQVAQQVAAGADEASQASAGLTRLAEQQRRLINQFRV 709