Pairwise Alignments

Query, 548 a.a., methyl-accepting chemotaxis protein HlyB from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., Histidine kinase, HAMP region:Cache:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  221 bits (562), Expect = 8e-62
 Identities = 134/350 (38%), Positives = 201/350 (57%), Gaps = 8/350 (2%)

Query: 199 MVIIAAGLIISFITSLVIITNLRSRVAYLKDRMSSAAANLSLRTRLELDGNDELCDIGKS 258
           ++I+  G+++S +   +   NL  R  +       AA    L  RL ++  DE   +G  
Sbjct: 288 LIILLLGMLLSVLLRPL---NLMGRAMH-----DIAAGEGDLTKRLVIESQDEFGHLGNG 339

Query: 259 FNAFIDKVHHSIEEVAENSKELATMASSVSQRAHMTQSNCASQRDRTVQVATAIHELGAT 318
           FN F++++H S+ EVA ++ +L  +A  V   ++ +  N   Q  RT  VA AI+ELGA 
Sbjct: 340 FNLFVERIHDSMREVASSTVQLNEVALRVLNASNSSMLNSDQQSHRTNSVAAAINELGAA 399

Query: 319 VSEIASNAAMAADVAKQATLHSGEGKKVVGEVQNRIQTLVNELDNATQVVSSLATQINGI 378
             EIA NAA A+  +  A   + +G+ VVG+    +  L   + +A+  + +L T+   I
Sbjct: 400 TQEIAQNAARASGHSSDARTLASDGQDVVGQNIEAMSRLSKRISSASGQIETLNTKTANI 459

Query: 379 SSTLDTIRSISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRSAASTEEIQQVI 438
              LD I  IS+QTNLLALNAAIEAARAGE GRGFAVVADEVR+LA R+  S  ++Q++I
Sbjct: 460 GQILDVITGISQQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAHRTQESASQVQEMI 519

Query: 439 NRLQTESTRAVEAMEKGRSQSDVVVEFSAKANQSLTEINSQIDQINDQNIQVATATEEQS 498
            +LQ+ +  AV  M   + +S   V  + KA  SL  +  +I +I+  N  VA ATEEQ+
Sbjct: 520 EQLQSGAREAVSIMNDSQRESVETVGIANKAVASLEHVTERIGEIDGMNQSVAAATEEQT 579

Query: 499 TVVEDINRNVEDINQLTTETSHVADELSRASASLQRLSSQLDKLVGSFEL 548
            VVE IN ++ +IN L  +     +   RA   L++ S++L +LVGSF +
Sbjct: 580 AVVEAINVDITEINTLNQQGVENLNATLRACTDLEQQSTRLTQLVGSFRI 629