Pairwise Alignments

Query, 548 a.a., methyl-accepting chemotaxis protein HlyB from Vibrio cholerae E7946 ATCC 55056

Subject, 570 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  220 bits (560), Expect = 1e-61
 Identities = 165/566 (29%), Positives = 295/566 (52%), Gaps = 47/566 (8%)

Query: 4   NKFSLKWMLAIAVAIPAIALLFVAFTSLNTMSVMQAQSNSL---YANTAAPMRAMAEATS 60
           +KFS K + A  +     AL+ +A  +L  + V +  +N+L   ++N    +    EA +
Sbjct: 31  SKFSTKLLSAFIIC----ALITLAVGALGMVGVTRL-ANALELTFSNNLVSVSNTNEALT 85

Query: 61  RIPRMRVGIDMML-LQETALKDAKGVLKRVEEARTEDIPEMRQAMQVAVDSQVNPELKEQ 119
                  G+  +L  Q+  + +      RV +A ++D+   ++   +   + +  +    
Sbjct: 86  SFTAHNRGLYRLLDAQDGGVSETDK--DRVRQALSDDLARAQKVFAIYRATPLEDD---- 139

Query: 120 ARKLQARFEQMVREELEPMLQAFANNDMTTAQNIYRDKY-----------APTYGEMRKQ 168
                   E+   ++LE ML A+ +        +    Y           + ++ ++R  
Sbjct: 140 --------ERAAGDQLELMLPAYISGSQQVVDLMKAGNYEAARTQLNSLSSESFTKVRSY 191

Query: 169 ANQILDTLLQQAEQQNHASVESFEAGRTKQMVIIAAGLIISFITSL---VIITNLRSRVA 225
              ++D+  +Q ++   A+ +     +   ++++  G++I+F+ ++   V+IT + +R  
Sbjct: 192 MRVMIDSNNRQIKEGAAAAADL----KASSVLMLEIGVVIAFLVAIMLGVLITRMITRPL 247

Query: 226 YLKDRMSSAAANLSLRTRLELDGNDELCDIGKSFNAFIDK---VHHSIEEVAENSKELAT 282
            +    +   A   L   +     DE    G+  NA  D    + ++I+++A  S +LA+
Sbjct: 248 AVAVASAQRIAGGDLTQPIVSTSGDEA---GQLLNALSDMQGGLKNTIQQIASASDQLAS 304

Query: 283 MASSVSQRAHMTQSNCASQRDRTVQVATAIHELGATVSEIASNAAMAADVAKQATLHSGE 342
            A  +S     +      Q D   Q ATA++++ A V E+A NA   ++ +K AT  + +
Sbjct: 305 AAEELSAVTDESTRGLTRQNDEIQQAATAVNQMTAAVEEVARNAVSTSEASKSATDDAVD 364

Query: 343 GKKVVGEVQNRIQTLVNELDNATQVVSSLATQINGISSTLDTIRSISEQTNLLALNAAIE 402
           G+  V      I T+V+E+  +T  VS LA  +  IS  LD IRSI+EQTNLLALNAAIE
Sbjct: 365 GRGQVDHTVKGITTMVHEITASTGAVSELAGHVREISKVLDVIRSIAEQTNLLALNAAIE 424

Query: 403 AARAGEQGRGFAVVADEVRTLASRSAASTEEIQQVINRLQTESTRAVEAMEKGRSQSDVV 462
           AARAGEQGRGFAVVADEVR LA R+ AST EI+ +I+ +Q+ +  AV AM K  S +   
Sbjct: 425 AARAGEQGRGFAVVADEVRALAHRTQASTVEIEGMISTVQSGADGAVAAMGKSLSLATNT 484

Query: 463 VEFSAKANQSLTEINSQIDQINDQNIQVATATEEQSTVVEDINRNVEDINQLTTETSHVA 522
            E + +A  +L +I   +  IN++N+ +A+A+EEQ+ V  +++RN+ +I  L+T+++  A
Sbjct: 485 QELALRAGAALEKITLGVATINERNLVIASASEEQAQVAREVDRNLINIQDLSTQSAAGA 544

Query: 523 DELSRASASLQRLSSQLDKLVGSFEL 548
           ++ S +S  L RL++  + LV +F+L
Sbjct: 545 NQTSASSQELSRLATSFNSLVANFKL 570