Pairwise Alignments

Query, 548 a.a., methyl-accepting chemotaxis protein HlyB from Vibrio cholerae E7946 ATCC 55056

Subject, 542 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  214 bits (545), Expect = 7e-60
 Identities = 139/397 (35%), Positives = 220/397 (55%), Gaps = 8/397 (2%)

Query: 159 APTYGEMRKQANQILDTLLQQAEQQNHASVESFEAGRTK--QMVIIAAGLIISF--ITSL 214
           A + GEM+  A+Q+ +T L++    N A  E   A      Q  +   G+ I+   IT+L
Sbjct: 147 ATSNGEMKSAADQV-ETGLKKLIGVNDAKAEKAGAAANAAYQQTLWMVGIFITVGVITTL 205

Query: 215 VII-TNLRSRVAYLKDRMSSAA--ANLSLRTRLELDGNDELCDIGKSFNAFIDKVHHSIE 271
           ++     RS    + D +S A   A   L   +   G DE   +  +       + +++ 
Sbjct: 206 LLAWMYTRSLTGPIGDSLSIAQRIATNDLSQDIPQHGTDEAAKLIAALATMQSNLRNALT 265

Query: 272 EVAENSKELATMASSVSQRAHMTQSNCASQRDRTVQVATAIHELGATVSEIASNAAMAAD 331
            + ++S +LA  +  +             Q +     ATA++E+ A V E+ASNAA A++
Sbjct: 266 LIGDSSTQLAATSEEMHAVTEDASRTILRQTNEIEMAATAVNEMSAAVEEVASNAASASE 325

Query: 332 VAKQATLHSGEGKKVVGEVQNRIQTLVNELDNATQVVSSLATQINGISSTLDTIRSISEQ 391
           V  Q++  +  G+  V E    I  +V+++   +  V  LA     IS  LD IR+I+EQ
Sbjct: 326 VTSQSSTAAMAGRAQVDETVTAINLMVSKVQITSTEVQGLAVMATDISKVLDVIRAIAEQ 385

Query: 392 TNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRSAASTEEIQQVINRLQTESTRAVEA 451
           TNLLALNAAIEAARAGE GRGFAVVADEVR LA R+  ST EI+Q+++ +QT +  AV A
Sbjct: 386 TNLLALNAAIEAARAGEAGRGFAVVADEVRALAHRTQQSTREIEQMVDSIQTGTGNAVSA 445

Query: 452 MEKGRSQSDVVVEFSAKANQSLTEINSQIDQINDQNIQVATATEEQSTVVEDINRNVEDI 511
           ME+   Q+   +E +  A ++L EI   I QIN++N+ +ATA EEQ+ V  +++R++  I
Sbjct: 446 MEQTSVQAHKTLEMANGAGKALLEITESISQINERNLMIATAAEEQAQVAREVDRSLVSI 505

Query: 512 NQLTTETSHVADELSRASASLQRLSSQLDKLVGSFEL 548
             L+++TS  +++ + A+A L  L+S L++L   F +
Sbjct: 506 RDLSSQTSEGSNQTAIATAELSTLASSLNRLTKQFRV 542