Pairwise Alignments

Query, 548 a.a., methyl-accepting chemotaxis protein HlyB from Vibrio cholerae E7946 ATCC 55056

Subject, 543 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  224 bits (572), Expect = 5e-63
 Identities = 138/349 (39%), Positives = 210/349 (60%), Gaps = 6/349 (1%)

Query: 204 AGLIISFITSLVIITNLRSRVAYLK---DRMSSAAANLSLRTR-LELDGNDELCDIGKSF 259
           AG+++  +  L+++T +RS V  L+     M+S A+  S  TR LE  GNDE+ ++G  F
Sbjct: 197 AGIVLIMV--LLLVTIVRSIVRPLRAAVGAMASIASGESDLTRTLETHGNDEITELGTHF 254

Query: 260 NAFIDKVHHSIEEVAENSKELATMASSVSQRAHMTQSNCASQRDRTVQVATAIHELGATV 319
           NAF+ K+ + + ++  ++  L   ++ +   A   QS    Q  +   VATA++E+   V
Sbjct: 255 NAFVAKLRNVVGQLQHSAVALGQASTDLGSDAEQAQSRSEQQSQQMDLVATAVNEVTYGV 314

Query: 320 SEIASNAAMAADVAKQATLHSGEGKKVVGEVQNRIQTLVNELDNATQVVSSLATQINGIS 379
            ++A NA  AA   + A   + +G+  +     +I+ L + +  A QV+ SLA++   I 
Sbjct: 315 QDVAKNAEHAASEMRDAESQAQQGQINIDNSLRQIEHLSSTIGQAVQVMQSLASESTQIG 374

Query: 380 STLDTIRSISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRSAASTEEIQQVIN 439
           S L+ I SI+EQTNLLALNAAIEAARAGEQGRGFAVVADEVR LA R+  ST EIQ +I 
Sbjct: 375 SVLEVISSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRLLAQRTQKSTAEIQSMIE 434

Query: 440 RLQTESTRAVEAMEKGRSQSDVVVEFSAKANQSLTEINSQIDQINDQNIQVATATEEQST 499
           RLQ  S  AV+ +      S + +E + +A QSLT I+  +  +N  N  +A+AT +Q+ 
Sbjct: 435 RLQKHSDAAVKVIGDSSRSSQLTIEQANQAGQSLTSISQALRNLNSLNASIASATLQQTH 494

Query: 500 VVEDINRNVEDINQLTTETSHVADELSRASASLQRLSSQLDKLVGSFEL 548
           VV+DIN+NV    QL+  T+  A++ + AS  L+ LS +L+ L+  F +
Sbjct: 495 VVDDINQNVTQAAQLSQSTALAAEQSTSASLHLRGLSEELNTLLKQFRV 543