Pairwise Alignments

Query, 548 a.a., methyl-accepting chemotaxis protein HlyB from Vibrio cholerae E7946 ATCC 55056

Subject, 558 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  214 bits (546), Expect = 5e-60
 Identities = 129/356 (36%), Positives = 197/356 (55%), Gaps = 4/356 (1%)

Query: 197 KQMVIIAAGLIISFITSLVIITNLRSRVAYLKDRMSS----AAANLSLRTRLELDGNDEL 252
           K + I    L+++FIT + I +     V  ++  + S    A     L  RL + G DE+
Sbjct: 203 KAVAIFMMSLVLAFITLIAIWSAAHRMVKPIRAMVDSLNDIAKGEGDLTARLSVRGEDEI 262

Query: 253 CDIGKSFNAFIDKVHHSIEEVAENSKELATMASSVSQRAHMTQSNCASQRDRTVQVATAI 312
            ++G +FN F+DK+   I +VA+ +  +   A  + ++     +   S  + T QV TAI
Sbjct: 263 AELGIAFNQFVDKLQGIIRDVADTTGRVKQAAVDIDRQTSEMANQLNSHNNETDQVVTAI 322

Query: 313 HELGATVSEIASNAAMAADVAKQATLHSGEGKKVVGEVQNRIQTLVNELDNATQVVSSLA 372
            E+ +T +E+A N    A+  + AT    + +  V      I  L++++++A   + SL+
Sbjct: 323 TEMSSTAAEVAQNTTQVAEATQAATGDVAKAQACVDTSLAEISNLMSQVNDAAANIQSLS 382

Query: 373 TQINGISSTLDTIRSISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRSAASTE 432
            Q   I+S L  I  I+EQTNLLALNAAIEAARAGEQGRGFAVVADEVR LASR+ AST 
Sbjct: 383 EQSQKINSVLSVIGGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLASRTQASTL 442

Query: 433 EIQQVINRLQTESTRAVEAMEKGRSQSDVVVEFSAKANQSLTEINSQIDQINDQNIQVAT 492
           EI +++  L    + AV+ M++ +      VE S   ++SL  + S +  IND + Q+A 
Sbjct: 443 EINEMLTDLHRLVSSAVKTMDESQHSCQRSVEASTAISESLGSVTSAVTAINDMSTQIAA 502

Query: 493 ATEEQSTVVEDINRNVEDINQLTTETSHVADELSRASASLQRLSSQLDKLVGSFEL 548
           A  EQS+V E+INRNV  I ++       + E    S ++    +QL  LVG F++
Sbjct: 503 AATEQSSVTEEINRNVYAIQEIVNALLVSSQEARTVSRTVSTEGAQLSNLVGQFKV 558