Pairwise Alignments

Query, 548 a.a., methyl-accepting chemotaxis protein HlyB from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  226 bits (576), Expect = 2e-63
 Identities = 159/553 (28%), Positives = 274/553 (49%), Gaps = 19/553 (3%)

Query: 3   INKFSLKWMLAIAVAIPAIALLFVAFTSLNTMSVMQAQSNSLYANTAAPMRAMAEATSRI 62
           +N+  +K  + +   IP + L+ V   S++ MS ++     +Y +   P+  +       
Sbjct: 1   MNQLQIKHKMLLGFFIPVLLLIIVCGVSMSIMSKIEDGVLRIYNDRVVPLEDLK------ 54

Query: 63  PRMRVGIDMMLLQETALKDAKGVLKRVEEARTEDIPEMRQAMQVAVDSQVNPELKEQARK 122
               +G D  +    A+  A       EEAR   I E ++ +    D  ++ EL    +K
Sbjct: 55  ---LIGDDYAVSVIDAINKANAGGFSAEEARNGLI-EAKKNIASRWDKYMSTELTADEQK 110

Query: 123 LQARFEQM---VREELEPMLQAFANNDMTTAQNIYRDKYAPTYGEMRKQANQILD--TLL 177
           L ++ +Q+     ++++ ++   +    +       D   P Y  +   + ++ +  TL 
Sbjct: 111 LASQTQQLFAPANQQIQLLIDKLSGKSGSVTGQFSAD-IIPLYQVIDPISGKVAELVTLQ 169

Query: 178 QQAEQQNHASVESFEAGRTKQMVIIA--AGLIISFITSLVIITNLRSRVAYLKDRMSSAA 235
                     VE+  +   K  + +A  A LI SF   + +   + + V  ++ ++    
Sbjct: 170 IHIADLEREQVETLHSSSLKWFIGLAVFAVLITSFF-GVWVNRGVMTPVTEIRQKLRQIR 228

Query: 236 ANLSLRTRLELDGNDELCDIGKSFNAFIDKVHHSIEEVAENSKELATMASSVSQRAHMTQ 295
               +     +  +DEL  I K  N  ++ +   ++ +AE +  L   A  +++      
Sbjct: 229 EKSDMTVSFTVFRDDELGHIAKDLNGVVNHLKGILKNIAEAASTLGDSADELNEFTRQAN 288

Query: 296 SNCASQRDRTVQVATAIHELGATVSEIASNAAMAADVAKQATLHSGEGKKVVGEVQNRIQ 355
                Q+  T Q ATA++E+ A V+E+A ++  AA+ A+ A   +  G  +V +  + + 
Sbjct: 289 DRMFKQQSETEQTATAMNEMTAAVAEVAQSSNSAAESARNADESAARGNSIVQQSISSMS 348

Query: 356 TLVNELDNATQVVSSLATQINGISSTLDTIRSISEQTNLLALNAAIEAARAGEQGRGFAV 415
            L +++     V+  LAT+   I   LD I+SI+EQTNLLALNAAIEAARAGEQGRGFAV
Sbjct: 349 VLASQIQGTAAVIGELATESQNIGRVLDVIKSIAEQTNLLALNAAIEAARAGEQGRGFAV 408

Query: 416 VADEVRTLASRSAASTEEIQQVINRLQTESTRAVEAMEKGRSQSDVVVEFSAKANQSLTE 475
           VADEVRTLA R++ ST EI+ +I  LQ     AV +ME+G +Q D   E +  A  +L +
Sbjct: 409 VADEVRTLAQRTSESTREIESMIESLQQGVKSAVNSMEQGIAQVDNANESTNAAGSALQD 468

Query: 476 INSQIDQINDQNIQVATATEEQSTVVEDINRNVEDINQLTTETSHVADELSRASASLQRL 535
           I + +D I   N  +ATA +EQS V E IN+++  I+ +  E++  A++LS A   L +L
Sbjct: 469 IVASVDSITQLNTHIATAADEQSCVAESINQSIIAISDIAQESTQAANDLSEAVHQLAQL 528

Query: 536 SSQLDKLVGSFEL 548
           +  +   VG+F L
Sbjct: 529 AGHMRTQVGTFIL 541