Pairwise Alignments

Query, 548 a.a., methyl-accepting chemotaxis protein HlyB from Vibrio cholerae E7946 ATCC 55056

Subject, 649 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  213 bits (541), Expect = 2e-59
 Identities = 146/422 (34%), Positives = 227/422 (53%), Gaps = 26/422 (6%)

Query: 149 TAQNIYRDKYAPTYGEMRKQANQILDTL-------------------LQQAEQQNHASVE 189
           T +  YRD     YG ++ Q  +I + L                    QQ E   +A  +
Sbjct: 232 TGRTQYRDALKAVYGIIQNQNGRIDEGLNVIGPKVAAVLQEYNKAIEQQQGELGLYAQQK 291

Query: 190 SFEAGRTKQMVIIAAGLIISFITSLVIITNLRSRVAYLKDRMSSAAANLS---LRTRLEL 246
           S  A  T  +V IAA L+  ++ ++ ++  +R  V      ++S A  ++   L      
Sbjct: 292 SENAIDTVVVVAIAAMLMAIWL-AITVVRAIRRPVGGEPREIASIAREIAGGNLGQNFLR 350

Query: 247 DGNDELCDIGKSFNAFIDKVHHSIEEVAENSKELATMASSVSQRAHMTQSNCASQRDRTV 306
           +G+  +       N   D +   + E+ + S+ L   +S +      ++ N  SQ D+  
Sbjct: 351 EGSTGIYAAMAEMN---DNLRRIVSELNDASRTLGDSSSGMLGVTEESRKNSESQADQLA 407

Query: 307 QVATAIHELGATVSEIASNAAMAADVAKQATLHSGEGKKVVGEVQNRIQTLVNELDNATQ 366
             A+A+ E+  TV +IA NA  A+++A +A  H+ EG  VV + +  I  LV+ + + + 
Sbjct: 408 HTASAMQEMTHTVDDIARNAQRASEMASEADHHAQEGMGVVEDTRRSIMVLVDNITDVSG 467

Query: 367 VVSSLATQINGISSTLDTIRSISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASR 426
           ++ +L  +   + S LD IR I+EQTNLLALNAAIEAARAGEQGRGFAVVADEVR LASR
Sbjct: 468 IIENLEKETENVGSILDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLASR 527

Query: 427 SAASTEEIQQVINRLQTESTRAVEAMEKGRSQSDVVVEFSAKANQSLTEINSQIDQINDQ 486
           +  STEEIQ +I RLQ ES R+VE+M    +++    E + KA  +L  I   +  I D 
Sbjct: 528 TQNSTEEIQALIGRLQAESRRSVESMRVNVTEATQTSEKANKAIAALGAIADSVMAIRDM 587

Query: 487 NIQVATATEEQSTVVEDINRNVEDINQLTTETSHVADELSRASASLQRLSSQLDKLVGSF 546
           N Q+A A EEQ+TVV  IN +VE+I+ L    +  ++++  ++  +  +SS+L  +VG F
Sbjct: 588 NHQIAVAAEEQATVVGTINVSVEEISGLARMNAAGSEQVQNSANGISEISSKLSGIVGRF 647

Query: 547 EL 548
           +L
Sbjct: 648 KL 649