Pairwise Alignments

Query, 548 a.a., methyl-accepting chemotaxis protein HlyB from Vibrio cholerae E7946 ATCC 55056

Subject, 546 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  218 bits (556), Expect = 4e-61
 Identities = 140/436 (32%), Positives = 237/436 (54%), Gaps = 6/436 (1%)

Query: 114 PELKEQARKLQARFEQMVREELEPMLQAFANNDMTTAQNIYRDKYA-PTYGEMRKQANQI 172
           PEL+    + Q  ++  +    +      + + +  A   Y D+   P +  +R   ++ 
Sbjct: 112 PELQSNKAQFQREYDAWLNAATQVFTMVDSQSPVAAAS--YNDEVVMPLFKALRGHYDKT 169

Query: 173 LDTLLQQAEQQNHASVESFEAGRTKQMVIIAAGLIISFITSLVIITNLRSRVAYLKDRMS 232
            + +  +A++    ++ + + G      II   ++ S ++ +     + SRV  L D M 
Sbjct: 170 GEWVKNKADEVTSEALIASQRGINLLFGIIILVILASIVSVVYGPRLVTSRVEQL-DTMI 228

Query: 233 SAAANLS--LRTRLELDGNDELCDIGKSFNAFIDKVHHSIEEVAENSKELATMASSVSQR 290
           +A ++    LR RL+  G DEL  + ++FN  + K+   I  +  ++  L    + ++  
Sbjct: 229 AAISDGEGDLRGRLDDSGRDELSLLARTFNGLMMKLQQLIGTIKSDAVSLDARVTGLNHS 288

Query: 291 AHMTQSNCASQRDRTVQVATAIHELGATVSEIASNAAMAADVAKQATLHSGEGKKVVGEV 350
           A  ++     Q     Q+ATA+H+L   V E+AS++  A    + A     E   VVG+ 
Sbjct: 289 AKESEKISTEQNANLEQIATAVHQLSHAVHEVASSSQNALSDTEHANNLIKESNAVVGQS 348

Query: 351 QNRIQTLVNELDNATQVVSSLATQINGISSTLDTIRSISEQTNLLALNAAIEAARAGEQG 410
             R+Q L   + +A++V+ +LA++   I + LD IR I+EQTNLLALNAAIEAARAGEQG
Sbjct: 349 VERVQQLAGVVSHASEVIQNLASESKQIVTVLDVIRGIAEQTNLLALNAAIEAARAGEQG 408

Query: 411 RGFAVVADEVRTLASRSAASTEEIQQVINRLQTESTRAVEAMEKGRSQSDVVVEFSAKAN 470
           RGFAVVADEVRTLASR+  STE+IQ+++  L++  + AV A++ G  Q D VV+ S    
Sbjct: 409 RGFAVVADEVRTLASRTQQSTEDIQRMVAGLESGVSEAVSAIDSGTRQVDSVVDASGSIT 468

Query: 471 QSLTEINSQIDQINDQNIQVATATEEQSTVVEDINRNVEDINQLTTETSHVADELSRASA 530
           ++L E++  + +  D    +ATATE+QS VV+++N+N+  +N L+ E+  V      A+ 
Sbjct: 469 KALAEVDEAVSRTKDLIYLIATATEQQSKVVDEVNQNISSLNLLSQESIGVVRRTREAAD 528

Query: 531 SLQRLSSQLDKLVGSF 546
            + ++ + L   VG F
Sbjct: 529 EIAQIGTGLSGNVGRF 544