Pairwise Alignments

Query, 548 a.a., methyl-accepting chemotaxis protein HlyB from Vibrio cholerae E7946 ATCC 55056

Subject, 548 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  216 bits (549), Expect = 2e-60
 Identities = 129/312 (41%), Positives = 186/312 (59%), Gaps = 6/312 (1%)

Query: 240 LRTRLELDGNDELCDIGKSFNAFIDKVH---HSIEEVAENSKELATMASSVSQRAHMTQS 296
           L  RLE  G DEL  +  SFN F+ K+    +S+     +S+ELA   + +S +A M  +
Sbjct: 240 LTLRLEESGRDELKQVAASFNEFVAKIQALVNSVSASVTHSRELAEGLADISAQASMVTA 299

Query: 297 NCASQRDRTVQVATAIHELGATVSEIASNAAMAADVAKQATLHSGEGKKVVGEVQNRIQT 356
           N  ++   T  VATAI+E+    SE+ASNA +AAD A  A   + +   VV     +I+ 
Sbjct: 300 NMQAE---TQSVATAINEMSMASSEVASNAQLAADSAGSADGEADDTVAVVDGAVAKIKG 356

Query: 357 LVNELDNATQVVSSLATQINGISSTLDTIRSISEQTNLLALNAAIEAARAGEQGRGFAVV 416
           L NEL+       +L      I   LD I  I+EQTNLLALNAAIEAARAGE GRGFAVV
Sbjct: 357 LSNELEVTADEAQALQISSGKIGQILDVIVGIAEQTNLLALNAAIEAARAGEAGRGFAVV 416

Query: 417 ADEVRTLASRSAASTEEIQQVINRLQTESTRAVEAMEKGRSQSDVVVEFSAKANQSLTEI 476
           ADEVRTLASR+  ST+EI  +I  ++        ++ + ++QS+  V  +++  ++L  I
Sbjct: 417 ADEVRTLASRTQESTQEINAIIEAIRASVDSVNASVARAKAQSEQTVGETSQVVEALQTI 476

Query: 477 NSQIDQINDQNIQVATATEEQSTVVEDINRNVEDINQLTTETSHVADELSRASASLQRLS 536
            S I QI+D NIQ+ATATEEQS V+ ++N NV  IN ++ E    ++E+   S  ++  S
Sbjct: 477 KSSIRQISDMNIQIATATEEQSAVIAELNMNVTRINDISLENQQKSEEIGSTSEQIKSGS 536

Query: 537 SQLDKLVGSFEL 548
           + L+ L+ +F+L
Sbjct: 537 ADLESLISTFKL 548