Pairwise Alignments

Query, 548 a.a., methyl-accepting chemotaxis protein HlyB from Vibrio cholerae E7946 ATCC 55056

Subject, 662 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  229 bits (583), Expect = 3e-64
 Identities = 147/448 (32%), Positives = 236/448 (52%), Gaps = 16/448 (3%)

Query: 116 LKEQARKLQARFEQMVREELEPMLQAFANNDMTTAQNIYRDK-YAPTYGEMRKQANQI-- 172
           L  +    Q RF  +  +++    Q   ++    A N  RDK  +   G +  Q++    
Sbjct: 215 LVSEQNTYQERFLALATDKVNADYQQVVSSPTFMAVNALRDKAMSQDAGALSGQSSTDWF 274

Query: 173 ------LDTLLQQAEQQNHASVESFEAGRTKQMVIIAAGLIISFITSLVIIT-------N 219
                 +D L Q   Q +H  +    +       ++ + +++  ++ LV+I         
Sbjct: 275 AKSTARIDALRQFERQLSHHLLTDTRSALANAKSLMVSVIVLMLVSGLVVILLSLFIGRY 334

Query: 220 LRSRVAYLKDRMSSAAANLSLRTRLELDGNDELCDIGKSFNAFIDKVHHSIEEVAENSKE 279
           L + + +L  +++ +  +  L  R++L G DE+  +G +FN  +      I  V  N++ 
Sbjct: 335 LHASLRHLYHKVTESQKHYDLSVRVDLKGKDEIGQLGSAFNHMMADFEKVIGMVRTNTQG 394

Query: 280 LATMASSVSQRAHMTQSNCASQRDRTVQVATAIHELGATVSEIASNAAMAADVAKQATLH 339
           L T +  +   A + + + A       QVA+A+ E+ ATV EIA NA  A++ + QA   
Sbjct: 395 LLTASQEMEGCARIMREDVALGHSEVDQVASAMTEMSATVQEIAQNAVQASEASAQANKE 454

Query: 340 SGEGKKVVGEVQNRIQTLVNELDNATQVVSSLATQINGISSTLDTIRSISEQTNLLALNA 399
           + EG   V    + I  L  E+ +A Q +++L   I GI   L  I  I+EQTNLLALNA
Sbjct: 455 AKEGSLEVERTADSINELAQEIADAAQAINNLDEDIKGIVDVLGVISGIAEQTNLLALNA 514

Query: 400 AIEAARAGEQGRGFAVVADEVRTLASRSAASTEEIQQVINRLQTESTRAVEAMEKGRSQS 459
           AIEAARAGE GRGFAVVADEVR+LA R+  STE+I+ +  RL+  +  AV+AME GR+++
Sbjct: 515 AIEAARAGEMGRGFAVVADEVRSLAQRAQTSTEDIRSMTERLERGAKIAVKAMESGRNKA 574

Query: 460 DVVVEFSAKANQSLTEINSQIDQINDQNIQVATATEEQSTVVEDINRNVEDINQLTTETS 519
           ++ V  S +A + L  I S++  I+  N Q+A AT EQS V E++N+N   I+ +   T 
Sbjct: 575 EISVVESKRAGEELIRIVSEVSVIDSMNEQIAAATHEQSAVSEEVNQNAMKISDIYRNTH 634

Query: 520 HVADELSRASASLQRLSSQLDKLVGSFE 547
            V+D LS+ + SL    S + +LV  F+
Sbjct: 635 EVSDRLSQLNESLLNDVSAMSELVSKFK 662