Pairwise Alignments

Query, 548 a.a., methyl-accepting chemotaxis protein HlyB from Vibrio cholerae E7946 ATCC 55056

Subject, 674 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  221 bits (563), Expect = 7e-62
 Identities = 153/551 (27%), Positives = 281/551 (50%), Gaps = 37/551 (6%)

Query: 32  NTMSVMQAQSNSLYANTAA-----PMRAMAEATSRIPRMRVGIDMMLLQETALKDAKGVL 86
           N++ +MQA+  SL    +       +   A+ T+ +  +   ID+   Q+   ++     
Sbjct: 127 NSLKMMQAREQSLQTQESLVDNLESLEGAADDTASL--LLDLIDLETSQDPTEREIAATA 184

Query: 87  KRVEEARTEDIPEMRQAMQVAVDSQVNPELKEQ---ARKLQARFEQMVREELEPMLQAFA 143
             ++ + +  I      +     S+    LKE      + Q + E + R     + Q   
Sbjct: 185 SNIDNSFSNLITSSYDLVNAKEKSKYETILKELDYIISEAQNKLEYVSRHWEGVIDQEAL 244

Query: 144 NNDMTTAQNIYRDKYAPTYGEMRK--------QANQILDTLLQQAEQQNHA--------- 186
           +N  T A  ++     P     RK        QA+Q+L+T+   A   N +         
Sbjct: 245 DNINTEASKVFTMLNGPDSILKRKGQQLDFNLQASQLLNTVESNATAVNQSMGSLNKAIE 304

Query: 187 ---------SVESFEAGRTKQMVIIAAGLIISFITSLVIITNLRSRVAYLKDRMSSAAAN 237
                    +++  ++   K + ++   ++++ + S+ +I  L++ +  + + ++  A+ 
Sbjct: 305 STSQAVSVKAIDEIDSASYKTLALVLIAIVVAVLVSIAVIRPLKNSLDKVNNALNILASG 364

Query: 238 LSLRTRLELDGNDELCDIGKSFNAFIDKVHHSIEEVAENSKELATMASSVSQRAHMTQSN 297
            +L  +L+  G+DE  ++ ++ N  +D +   I+ + + S +LA  A   S     T + 
Sbjct: 365 -NLTHKLDDSGHDEFAELSRNCNRLVDSLRTLIQGILDRSNQLAAAAEETSAITAQTTAG 423

Query: 298 CASQRDRTVQVATAIHELGATVSEIASNAAMAADVAKQATLHSGEGKKVVGEVQNRIQTL 357
              Q+++  QVATA  +L ++  +++++A  A +  +QA   +   + +  E +  I  L
Sbjct: 424 IQEQKNQVDQVATATTQLSSSAMQVSTSADEALNQIRQADEEAQHMRAIADENKRTILAL 483

Query: 358 VNELDNATQVVSSLATQINGISSTLDTIRSISEQTNLLALNAAIEAARAGEQGRGFAVVA 417
            +E+  A QV++ + +    I S LD IR I+EQTNLLALNAAIEAARAGEQGRGFAVVA
Sbjct: 484 ADEVAKAGQVINKVHSDSASIGSILDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVA 543

Query: 418 DEVRTLASRSAASTEEIQQVINRLQTESTRAVEAMEKGRSQSDVVVEFSAKANQSLTEIN 477
           DEVR+LASR+  ST+EIQQ+I  LQ  +  AV  ME GR Q++  VE + +AN +L  I+
Sbjct: 544 DEVRSLASRTQDSTQEIQQMIQVLQQGTQEAVSVMELGRQQANSCVEKTEQANVALESIS 603

Query: 478 SQIDQINDQNIQVATATEEQSTVVEDINRNVEDINQLTTETSHVADELSRASASLQRLSS 537
           + +   +D    +A A +EQ+ V + ++  +E I  ++ ET+  AD+ +++S  + +L+ 
Sbjct: 604 NAVHYAHDSGTHIANAAQEQNLVSQQVSEKLEHIAAISEETATGADQTAQSSHQVAQLAE 663

Query: 538 QLDKLVGSFEL 548
           +L   VG F++
Sbjct: 664 ELQASVGEFKV 674