Pairwise Alignments

Query, 548 a.a., methyl-accepting chemotaxis protein HlyB from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., methyl-accepting chemotaxis protein (NCBI) from Shewanella oneidensis MR-1

 Score =  242 bits (617), Expect = 3e-68
 Identities = 166/558 (29%), Positives = 284/558 (50%), Gaps = 29/558 (5%)

Query: 3   INKFSLKWMLAIAVAIPAIALLFVAFTSLNTMSVMQAQSNSLYANTAAPMRAM------- 55
           +N   +K  + I + +P + L+ +AFT++N M  ++     +Y N   P+  +       
Sbjct: 1   MNGVQIKHKMFIGILVPLLMLVIIAFTAINMMGKLEHSVERIYENQVVPLNDLKIIADKY 60

Query: 56  -AEATSRIPRMRVGIDMMLLQETALKDAKGVLKRVEEARTEDIPEMRQAMQVAVD-SQVN 113
             +    + +   G         AL+DA   +K            +     +A + ++  
Sbjct: 61  AVDVNDAVNKANAGGFSASQAANALEDASKTIK------------LHWQKYLATELTKEE 108

Query: 114 PELKEQARKLQARFEQMVREELEPMLQAFANNDMTTAQNIYRDKYAPTYGEMRKQANQIL 173
            +L +QA  L     Q + E+L   L++F N D+    N   DK  P Y  +   ++ I 
Sbjct: 109 SQLTQQAAPLFTAANQQI-EQLVSYLRSF-NGDVAHQLN---DKILPLYQVIDPISSTIS 163

Query: 174 DTLLQQ---AEQQNHASVESFEAGRTKQMVIIAAGLIISFITSLVIITNLRSRVAYLKDR 230
           +    Q   A+++     E +++  T  + +    +++S +  L +  ++ + +  +   
Sbjct: 164 ELTALQIKIADKEIAVDKELYDSSITIFITLAGLAILLSILIGLWVKRSVMNPINDIVRN 223

Query: 231 MSSAAANLSLRTRLELDGNDELCDIGKSFNAFIDKVHHSIEEVAENSKELATMASSVSQR 290
           + +   +  L  +     +DEL  I  S    I+ +   +  +AE +  + + A+ +S  
Sbjct: 224 LKTIRQDSDLTVKFHTFNDDELGLISTSLTQVIEHLRGILHSIAEAANTVTSSATELSSF 283

Query: 291 AHMTQSNCASQRDRTVQVATAIHELGATVSEIASNAAMAADVAKQATLHSGEGKKVVGEV 350
              T      Q+  T Q ATA++E+ ATV+E+A + + AA+ AK A  ++  G ++V + 
Sbjct: 284 TQETNKRMQQQQAETEQTATAMNEMTATVAEVAQSTSAAANSAKDADTYAANGNRIVIDS 343

Query: 351 QNRIQTLVNELDNATQVVSSLATQINGISSTLDTIRSISEQTNLLALNAAIEAARAGEQG 410
            + +  L  ++    QV+  L+ +   I   LD I+SI+EQTNLLALNAAIEAARAGEQG
Sbjct: 344 ISSMSQLSEQIQKTAQVIGFLSNESQNIGRVLDVIKSIAEQTNLLALNAAIEAARAGEQG 403

Query: 411 RGFAVVADEVRTLASRSAASTEEIQQVINRLQTESTRAVEAMEKGRSQSDVVVEFSAKAN 470
           RGFAVVADEVRTLA R+  ST+EI+ +I  LQ    +AV AME G  Q D     + +A 
Sbjct: 404 RGFAVVADEVRTLAQRTQKSTQEIEAMIATLQQGVKQAVSAMEVGIKQVDDANNKANQAG 463

Query: 471 QSLTEINSQIDQINDQNIQVATATEEQSTVVEDINRNVEDINQLTTETSHVADELSRASA 530
           Q+L EI + +D I + N  +ATA EEQS+V E+INR++  I+ +T + +  A ELS +  
Sbjct: 464 QALKEIVASVDNIAELNTHIATAAEEQSSVAENINRSIIAISDITDDATRSALELSESVI 523

Query: 531 SLQRLSSQLDKLVGSFEL 548
           +L +L++ +   V +F L
Sbjct: 524 NLTKLANSMRSQVSAFRL 541