Pairwise Alignments

Query, 548 a.a., methyl-accepting chemotaxis protein HlyB from Vibrio cholerae E7946 ATCC 55056

Subject, 546 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  228 bits (580), Expect = 6e-64
 Identities = 156/541 (28%), Positives = 281/541 (51%), Gaps = 21/541 (3%)

Query: 18  IPAIALLFVAFTSLNTMSVMQAQSNSLYANTAAPMRAMAEA-----TSRIPRMRVGIDMM 72
           I ++ +L VA+ S+  ++ + + +  +  N    +R+ A+       +R   + + ID+M
Sbjct: 17  ILSLLVLGVAWFSVVQLAGLHSNTTKITENLIPSIRSSAQMHIALLDARRNELNMVIDVM 76

Query: 73  LLQETALKDAKGVLKRVEEARTEDIPEMRQAMQVAV----DSQVNPELKEQARKLQARFE 128
                A++ +K   +R E A++E     +Q  ++      D Q+  +L E A K  +   
Sbjct: 77  THDSAAIEISK---QRFETAKSEFEAGAQQYAKLNFVSEQDEQLFIKLGEAAEKYFSAHS 133

Query: 129 QMVREELEPMLQAFANNDMTTAQNIYRDKYAPTYGEMRKQANQILDTLLQQAEQQNHASV 188
            +V         A    DM +A  + +     T     ++   +     + A++    S 
Sbjct: 134 SLV--------SAIDQGDMASANIMIKTLTRQTLEVAGEETMNLRHENDRAAQEMVLQSE 185

Query: 189 ESFEAGRTKQMVIIAAGLIISFITSLVIITNLRSRVAYL-KDRMSSAAANLSLRTRLELD 247
            +++  +   +++  + +    + + ++I  +++ + +L K     +A NL+ +  +   
Sbjct: 186 NAYKTAKMLSIIVGFSTIFFVVVMAFLLIRQIQNPIMWLLKQTHEVSAGNLTNKLNMNAF 245

Query: 248 GNDELCDIGKSFNAFIDKVHHSIEEVAENSKELATMASSVSQRAHMTQSNCASQRDRTVQ 307
             DE   + +SFN   D +H  + EV+ +  +L++ A  +S  A  + +N  +Q++   Q
Sbjct: 246 ARDEFGQLAESFNEMQDNLHMLVSEVSNSIVQLSSAAEEISSVALHSSNNMETQQNELNQ 305

Query: 308 VATAIHELGATVSEIASNAAMAADVAKQATLHSGEGKKVVGEVQNRIQTLVNELDNATQV 367
           +ATA+HE+ ATV ++A N   AA+ A QA+  + +G + V +   RI  +   ++    V
Sbjct: 306 LATAMHEMQATVQDVARNTNDAANAATQASDTATQGSETVNDSIVRIDKVAGAIEATAVV 365

Query: 368 VSSLATQINGISSTLDTIRSISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRS 427
           +  L      I   L+ I+ I+EQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLA R+
Sbjct: 366 IRKLGDDSRNIGMVLEVIQGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAKRT 425

Query: 428 AASTEEIQQVINRLQTESTRAVEAMEKGRSQSDVVVEFSAKANQSLTEINSQIDQINDQN 487
             ST  I  +I+ LQ  +  A E M++ +      V  + +A +S+ +I+S +  I+  N
Sbjct: 426 QDSTSHINSIISELQLRANEAEETMQQSQEMMIETVCKAREAGESIAKISSSVSCISQMN 485

Query: 488 IQVATATEEQSTVVEDINRNVEDINQLTTETSHVADELSRASASLQRLSSQLDKLVGSFE 547
           IQ+ATATEEQ  V E++NRNV +I+  + + +  A +++ A   L  L++QL  +V  F 
Sbjct: 486 IQIATATEEQGAVSEELNRNVANISGASEDVATGAKQMAMACNDLSHLATQLQDMVKKFH 545

Query: 548 L 548
           +
Sbjct: 546 I 546