Pairwise Alignments

Query, 548 a.a., methyl-accepting chemotaxis protein HlyB from Vibrio cholerae E7946 ATCC 55056

Subject, 642 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  300 bits (767), Expect = 1e-85
 Identities = 171/349 (48%), Positives = 235/349 (67%), Gaps = 2/349 (0%)

Query: 200 VIIAAGLIISFITSLVIITNLRSRVAYLKDRMSSAAANLSLRTRLELDGNDELCDIGKSF 259
           +IIAAG I+  I     ++   ++VA +   +     +L  R RL ++G DE+  + + F
Sbjct: 296 LIIAAGFIMLAIVVAGSVSRPIAQVAAMFRDIGEGEGDL--RQRLPVNGKDEIAQLAQGF 353

Query: 260 NAFIDKVHHSIEEVAENSKELATMASSVSQRAHMTQSNCASQRDRTVQVATAIHELGATV 319
           N+FI K+  S+ EVA+ S++L   A  VS +A  T  +   Q+DRT+ V TAI+E+GATV
Sbjct: 354 NSFISKIQDSVIEVAQTSEQLGLSAKDVSNQAQQTLEDSHEQKDRTMMVVTAINEMGATV 413

Query: 320 SEIASNAAMAADVAKQATLHSGEGKKVVGEVQNRIQTLVNELDNATQVVSSLATQINGIS 379
           +EIASNAA AA  AK A   S  G+ VV   ++ I  L ++++   +V+ SLAT    I 
Sbjct: 414 NEIASNAAQAAVAAKDADTESNSGQVVVTRARDTINQLSHDVEQVGEVIESLATHTKSIG 473

Query: 380 STLDTIRSISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRSAASTEEIQQVIN 439
             LD IR+ISEQTNLLALNAAIEAARAGE GRGFAVVADEVR LASR+AAST E+Q +I+
Sbjct: 474 GILDVIRAISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLASRTAASTNEVQGMID 533

Query: 440 RLQTESTRAVEAMEKGRSQSDVVVEFSAKANQSLTEINSQIDQINDQNIQVATATEEQST 499
           +LQ+E++RAV AM + R++S   V    +A+QSL  I+ +I  I+D NIQVA ATEEQST
Sbjct: 534 KLQSEASRAVSAMAQSRARSHEGVTAVDEASQSLVGISKRIGLISDMNIQVAAATEEQST 593

Query: 500 VVEDINRNVEDINQLTTETSHVADELSRASASLQRLSSQLDKLVGSFEL 548
           VVEDINRNV +IN +T  T+  A   ++AS +L +L+ +LD LV  F++
Sbjct: 594 VVEDINRNVTEINDITQRTASTAQAAAQASLALNQLAHRLDTLVAKFKV 642