Pairwise Alignments

Query, 548 a.a., methyl-accepting chemotaxis protein HlyB from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  229 bits (585), Expect = 2e-64
 Identities = 130/309 (42%), Positives = 187/309 (60%)

Query: 240 LRTRLELDGNDELCDIGKSFNAFIDKVHHSIEEVAENSKELATMASSVSQRAHMTQSNCA 299
           L  R+E+   DE+  +  +FN F +K+H ++ +V++++  LAT A  +S   + TQ    
Sbjct: 326 LTRRIEVKSKDEIAQLALAFNRFAEKIHATVAQVSDSTSLLATSAEEMSAITNETQQMAK 385

Query: 300 SQRDRTVQVATAIHELGATVSEIASNAAMAADVAKQATLHSGEGKKVVGEVQNRIQTLVN 359
            Q   T QVATA++E+ ATV E+A NA  AAD A  A+  +  GK +V +V + I  L +
Sbjct: 386 RQHLETEQVATAMNEMAATVQEVAHNATDAADAATHASESTEHGKLLVEKVISTISLLAD 445

Query: 360 ELDNATQVVSSLATQINGISSTLDTIRSISEQTNLLALNAAIEAARAGEQGRGFAVVADE 419
           E+ +A + ++ L      I S L  IR+I++QTNLLALNAAIEAARAGEQGRGFAVVADE
Sbjct: 446 EIAHAAKAINELERNTAQIDSVLVVIRNIADQTNLLALNAAIEAARAGEQGRGFAVVADE 505

Query: 420 VRTLASRSAASTEEIQQVINRLQTESTRAVEAMEKGRSQSDVVVEFSAKANQSLTEINSQ 479
           VRTLASR+ AST EIQQ+I  LQ  +   V  M    + +   V    +A ++L  I   
Sbjct: 506 VRTLASRTQASTSEIQQMIEALQHSAKSTVSTMNTSTATTQNCVSLVHEAGEALEAITQA 565

Query: 480 IDQINDQNIQVATATEEQSTVVEDINRNVEDINQLTTETSHVADELSRASASLQRLSSQL 539
           +  I+  NIQ+A+A  EQ  V  +IN+NV +IN +T   +  A + +RA   L +LS +L
Sbjct: 566 VSTISQMNIQIASAANEQCAVSAEINKNVNNINDITINATESAVQTARAGDELAQLSMRL 625

Query: 540 DKLVGSFEL 548
             L+  F +
Sbjct: 626 TTLLAQFRI 634