Pairwise Alignments

Query, 548 a.a., methyl-accepting chemotaxis protein HlyB from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  237 bits (605), Expect = 8e-67
 Identities = 139/372 (37%), Positives = 215/372 (57%), Gaps = 9/372 (2%)

Query: 186 ASVESFEAGRTKQM-----VIIAAGLIISFITSLVIITNLRSRVAYLKDRMSS----AAA 236
           A VE +    T+QM     +I+   L+++  T+ VI+      V  +K+   +    A  
Sbjct: 183 AVVEDYRQTVTEQMAEKSLMILLIALVLTGATAFVIMVAAHRMVVPIKNMADNLNDIAKG 242

Query: 237 NLSLRTRLELDGNDELCDIGKSFNAFIDKVHHSIEEVAENSKELATMASSVSQRAHMTQS 296
              L  RL + G DE+  +G++FN F+DK+ H I +VA  + ++ T A+++  +  +  S
Sbjct: 243 EGDLTKRLSVKGEDEIAQLGRAFNLFVDKLQHIIGDVASATAKVKTAANAIHDQTKVMSS 302

Query: 297 NCASQRDRTVQVATAIHELGATVSEIASNAAMAADVAKQATLHSGEGKKVVGEVQNRIQT 356
              S  + T QV TAI E+ +T SE+A N    A+  + AT      ++ V      I  
Sbjct: 303 QLLSHNNETDQVVTAITEMSSTASEVAQNTTQVAEATQAATGDVANAQRCVDASLEEIAA 362

Query: 357 LVNELDNATQVVSSLATQINGISSTLDTIRSISEQTNLLALNAAIEAARAGEQGRGFAVV 416
           L+ ++++A   + SL+ Q   I+S L  I  I+EQTNLLALNAAIEAARAGEQGRGFAVV
Sbjct: 363 LMEQINHAAGSIKSLSEQSQKINSVLSVIGGIAEQTNLLALNAAIEAARAGEQGRGFAVV 422

Query: 417 ADEVRTLASRSAASTEEIQQVINRLQTESTRAVEAMEKGRSQSDVVVEFSAKANQSLTEI 476
           ADEVR+LASR+ AST EI ++++ L    ++AV+ M++ +      VE S   ++SL  +
Sbjct: 423 ADEVRSLASRTQASTLEINEMLSALHKLVSQAVKTMDESQQSCVRSVESSRAISESLGSV 482

Query: 477 NSQIDQINDQNIQVATATEEQSTVVEDINRNVEDINQLTTETSHVADELSRASASLQRLS 536
            S +  IND + Q+ATA  EQS+V E+INRNV  I ++  E  H ++  +R S ++ +  
Sbjct: 483 TSAVTAINDMSTQIATAATEQSSVTEEINRNVYAIQEIVNELLHSSEHAARVSQTVSQEG 542

Query: 537 SQLDKLVGSFEL 548
           + L  LVG F++
Sbjct: 543 TNLGNLVGQFKI 554