Pairwise Alignments

Query, 548 a.a., methyl-accepting chemotaxis protein HlyB from Vibrio cholerae E7946 ATCC 55056

Subject, 527 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  220 bits (560), Expect = 1e-61
 Identities = 152/551 (27%), Positives = 274/551 (49%), Gaps = 28/551 (5%)

Query: 2   IINKFSLKWMLAIAVAIPAIALLFVAFTSLNTMSVMQAQSNSLYANT--AAPMRAMAEA- 58
           + N      + A+     +I L+ +  +S    + +   S+ L  NT  A     + EA 
Sbjct: 1   MFNNAKTSTLTALPSVFASILLIIIGISSYRGFAELNNTSSRLVNNTKLAETFTNVREAF 60

Query: 59  -TSRIPRMRVGIDMMLLQETALKDAKGVLKRVEEARTEDIPEMRQAMQVAVDSQVNPELK 117
              R+  +    D + LQ+   ++ + +++++ E  T+ + +  + ++  +     P+++
Sbjct: 61  FELRLATLVHNSDAISLQQ---RNVRQLVEQLAEFNTDFMGQDARTIRTLL-----PQIE 112

Query: 118 EQARKLQARFEQMVREELEPMLQAFANNDMTTAQNIYRDKYAPTYGEMRKQANQILDTLL 177
           +  R  Q        +EL    Q     ++T+ +     K +        + NQ++  + 
Sbjct: 113 QYVRLYQ--------QELAFAKQTGTEPELTSERGALGPKVS-------NEINQLVKLIT 157

Query: 178 QQAEQQNHASVESFEAGRTKQMVIIAAGLIISFITSLVIITNLRSRVAYLKDRMSSAAAN 237
           Q+  +    + +   A     + +I   ++ S +++L +   L + V  +K R+    A+
Sbjct: 158 QRNHELGKQAEDKVNATEALLLGLILVAIVASLLSALFMSRRLVNIVHQIK-RVVEHLAD 216

Query: 238 LSLRTRLELDGNDELCDIGKSFNAFIDKVHHSIEEVAENSKELATMASSVSQRAHMTQSN 297
             L  + ++ G +ELC +G   +  ID + H I ++A+ S+ ++     ++ +++     
Sbjct: 217 GDLTQKTQISGQNELCALGADLDRVIDHLRHMISDIAQASEHMSDQIGQLNVQSNANTHA 276

Query: 298 CASQRDRTVQVATAIHELGATVSEIASNAAMAADVAKQATLHSGEGKKVVGEVQNRIQTL 357
             +    T QV TA+ E+ AT   +A +AA AA   +QA   + + KK V +  N +  L
Sbjct: 277 LQTHAVETDQVVTAMTEMSATAHNVAGDAASAARFTQQANEQADKSKKAVEQAANTVVAL 336

Query: 358 VNELDNATQVVSSLATQINGISSTLDTIRSISEQTNLLALNAAIEAARAGEQGRGFAVVA 417
           V ++D A   ++ +      I++ LD I  I++QTNLLALNAAIEAARAGEQGRGFAVVA
Sbjct: 337 VGKVDTAAHTIAEMNENTRHIATILDVIGDIADQTNLLALNAAIEAARAGEQGRGFAVVA 396

Query: 418 DEVRTLASRSAASTEEIQQVINRLQTESTRAVEAMEKGRSQSDVVVEFSAKANQSLTEIN 477
           DEVR LA+R+ AST EI Q++ RL+T +  AV AM++ +       + +    +SL  + 
Sbjct: 397 DEVRALAARTQASTAEINQMLERLRTGANSAVNAMDETKQSCQDAADTTTLVTESLETLT 456

Query: 478 SQIDQINDQNIQVATATEEQSTVVEDINRNVEDINQLTTETSHVADELSRASASLQRLSS 537
           + +  IN  + Q+ATA EEQS V E+INRN+  I ++  E +        ++ SL     
Sbjct: 457 TYVFDINGLSNQIATAAEEQSAVSEEINRNLNTIREMVEELNQSGKATLNSATSLAATKE 516

Query: 538 QLDKLVGSFEL 548
           QL  +V  F L
Sbjct: 517 QLTGVVSHFRL 527