Pairwise Alignments

Query, 548 a.a., methyl-accepting chemotaxis protein HlyB from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  236 bits (602), Expect = 2e-66
 Identities = 141/372 (37%), Positives = 213/372 (57%), Gaps = 9/372 (2%)

Query: 186 ASVESFEAGRTKQMV-----IIAAGLIISFITSLVIITNLRSRVAYLKDRMSS----AAA 236
           A VE +    T+QM+     I+   L+++ IT+ VI+   +  V  +K+   +    A  
Sbjct: 183 AVVEDYRTTVTEQMIDKSYAILLIALLLAAITAPVILVTAQRMVTPIKNMADNLNDIAKG 242

Query: 237 NLSLRTRLELDGNDELCDIGKSFNAFIDKVHHSIEEVAENSKELATMASSVSQRAHMTQS 296
              L  RL + G+DE+  +G+SFN F+DK+   I +VA  + ++ T A+++  +  +   
Sbjct: 243 EGDLTKRLAVKGDDEIAQLGRSFNLFVDKLQTIIGDVAHATAKVKTAANAIHDQTKVMSR 302

Query: 297 NCASQRDRTVQVATAIHELGATVSEIASNAAMAADVAKQATLHSGEGKKVVGEVQNRIQT 356
              S  + T QV TAI E+ AT SE+A N    A+    AT      ++ V      I  
Sbjct: 303 QLISHNNETDQVVTAITEMSATASEVAQNTTQVAEATHAATGDVANAQRCVDASLEEISA 362

Query: 357 LVNELDNATQVVSSLATQINGISSTLDTIRSISEQTNLLALNAAIEAARAGEQGRGFAVV 416
           L+ +++NA   + SL+ Q   I+S L  I  I+EQTNLLALNAAIEAARAGEQGRGFAVV
Sbjct: 363 LMAQINNAASNIQSLSEQSQKINSVLSVIGGIAEQTNLLALNAAIEAARAGEQGRGFAVV 422

Query: 417 ADEVRTLASRSAASTEEIQQVINRLQTESTRAVEAMEKGRSQSDVVVEFSAKANQSLTEI 476
           ADEVR LASR+ +ST EI ++++ L    + AV+ ME+ +      V+ S   ++SL  +
Sbjct: 423 ADEVRNLASRTQSSTLEINEMLSELHKLVSLAVKTMEESQQSCIRSVDSSRAISESLGSV 482

Query: 477 NSQIDQINDQNIQVATATEEQSTVVEDINRNVEDINQLTTETSHVADELSRASASLQRLS 536
            S +  IND + Q+ATA  EQS+V E+INRNV  I ++  E  H ++E +  S ++ +  
Sbjct: 483 TSAVTAINDMSTQIATAATEQSSVTEEINRNVFAIQEIVNELLHSSEEAASVSQTVSQEG 542

Query: 537 SQLDKLVGSFEL 548
             L KLVG F++
Sbjct: 543 LNLGKLVGQFKI 554