Pairwise Alignments

Query, 548 a.a., methyl-accepting chemotaxis protein HlyB from Vibrio cholerae E7946 ATCC 55056

Subject, 543 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  230 bits (587), Expect = 9e-65
 Identities = 155/551 (28%), Positives = 280/551 (50%), Gaps = 13/551 (2%)

Query: 2   IINKFSLKWMLAIAVAIPAIALLFVAFTSLNTMSVMQAQSNSLYANTAAPMRAMAEATSR 61
           + N   +K+ L  A+   A+ ++ V     N  ++ Q Q  S   N A  + A+  A   
Sbjct: 1   MFNSIRVKFSLMFAIMATALIVMAVTDAMQNRTTLKQMQEFSQRFNPA--ISAILNADRD 58

Query: 62  IPRMRVGIDMMLLQETALKDAKGVLKRVEEARTEDIPEMRQAMQVAVDSQVNPELKEQAR 121
           + + ++  +++L  E + ++ K  +   +E   +    M +      D   + E+ +   
Sbjct: 59  LYQAQLSEEVLLRPELSSENRKSEIDNWQENVDQARDRMGEFKNYLQD---HLEVIKSTS 115

Query: 122 KLQARFEQMVREELEPMLQAFANNDMTTAQNIYRDKYAPTYGEMRK---QANQILDTLLQ 178
             +A+F    +   E ++ A  NND   A+ ++ +K    +  +R     A +  D  ++
Sbjct: 116 GFEAQFSLWYQASSE-VINAVKNNDFELARQLHENKSKKEFKALRSIYNAAGEAADNRVK 174

Query: 179 QAE-QQNHASVESFEAGRTKQMVIIAAGLIISFITSLVIITNLRSRVAYLKDRMSSAAAN 237
           + + Q +  +    +   T   ++    L+I++    +I+  +R     + D +      
Sbjct: 175 ELDLQASEQATTQTQISVTIATLVAIVALVIAYFGPKIIVNAIRDITDRINDIVDGDG-- 232

Query: 238 LSLRTRLELDGNDELCDIGKSFNAFIDKVHHSIEEVAENSKELATMASSVSQRAHMTQSN 297
            +L  R+ +   DE+ ++  +FN F+ ++   +  +   +K+++    +++ ++  T   
Sbjct: 233 -NLTQRIPITRQDEIGELANAFNLFVAQLQQMVIAIISQTKDVSQTVENLATKSTTTIGI 291

Query: 298 CASQRDRTVQVATAIHELGATVSEIASNAAMAADVAKQATLHSGEGKKVVGEVQNRIQTL 357
              Q      + TA++E+ A V E+ASNA   A    +    + EGK ++ +  N IQ L
Sbjct: 292 SYEQEQFVDTIVTAVNEMSAAVREVASNALHTATEITKVNDQTIEGKNILTQSVNHIQQL 351

Query: 358 VNELDNATQVVSSLATQINGISSTLDTIRSISEQTNLLALNAAIEAARAGEQGRGFAVVA 417
              +  A  V+  L+     I+S LD IRSI+EQTNLLALNAAIEAARAGEQGRGFAVVA
Sbjct: 352 SESVKQAVAVIEKLSVNSANIASVLDVIRSIAEQTNLLALNAAIEAARAGEQGRGFAVVA 411

Query: 418 DEVRTLASRSAASTEEIQQVINRLQTESTRAVEAMEKGRSQSDVVVEFSAKANQSLTEIN 477
           DEVRTLASR+  ST++IQ++I  LQ     AV+++E G S ++  V  +++   +L EI 
Sbjct: 412 DEVRTLASRTETSTQDIQRMIEELQRGVNDAVKSIESGASLTNSTVTLASQTQDALDEIL 471

Query: 478 SQIDQINDQNIQVATATEEQSTVVEDINRNVEDINQLTTETSHVADELSRASASLQRLSS 537
           +   ++++ + Q ATATEEQ+ V E+INRN+ +++  T   + V  E  +   + Q + S
Sbjct: 472 NSTSKVSEMSTQTATATEEQTHVTEEINRNLTELSDKTRYCNTVIQETQQIVVNTQTICS 531

Query: 538 QLDKLVGSFEL 548
            L K V  F++
Sbjct: 532 NLQKEVSRFKV 542