Pairwise Alignments

Query, 359 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 315 a.a., Two-component response regulator from Pseudomonas fluorescens FW300-N2E2

 Score =  105 bits (263), Expect = 1e-27
 Identities = 89/309 (28%), Positives = 137/309 (44%), Gaps = 39/309 (12%)

Query: 45  NLLIDYVLLGGLIIVFQCTLL---IEITAIYYQKKTPWGFRLPLALVVVIVVMAIHIFGT 101
           NLLID VL G  +   Q   L   + +  +        G R       +++     + G 
Sbjct: 29  NLLIDAVLGGFWVAAMQFNPLPAAVTLAMMAMNNVAIGGLRF------LLIGALAQVAGI 82

Query: 102 LASYWLFPVLIAIAFLLPQKDNLLTITIIIPASIWVLIPHQTAEVTLRFSLAISACAAIM 161
           +    +FP              L ++ +  PA I+  +P           L   A     
Sbjct: 83  VVGVLIFP--------------LTSVPMTSPAQIYACLP--------LLCLYPMALGWFC 120

Query: 162 YVVVDAIRKLHTELFYLSTRHALTGTLN----RHQLDGFLKKCLRHRQLANESAVIAVID 217
           Y     + +   EL  LS   +LTG LN    + +L+   ++C RH         IA+ID
Sbjct: 121 YRQAYTLGRQKRELLALSRTDSLTGLLNHGAWKDRLNEEFQRCQRHPNDGAGRGAIALID 180

Query: 218 IDHFKSVNDLYGHDTGDKVITQVVEIMNTHCRELDLLFRLGGDEFLLLFENTSLTDATLV 277
           IDHFK++ND YGH  GD V+ Q+ +++  + R  D++ R GGDEF ++  + +L +A   
Sbjct: 181 IDHFKAINDTYGHVAGDVVLRQLGKMLKQNLRAADVVGRYGGDEFCVILPDLTLHNAVQA 240

Query: 278 MSHIGCRIQQTHYPYH--AKVTVSVGLAEALRT-DDPEQWFKRADQALYHSKKMGKNRVS 334
           M  +  R     Y  +   KV++S+GLA       D   W   ADQALY +K  G+NRV+
Sbjct: 241 MDGLRERFATLSYEQNPALKVSLSIGLAAFNPAYGDATHWLNDADQALYEAKTGGRNRVT 300

Query: 335 -FDEEHVIE 342
            F    V+E
Sbjct: 301 CFRHRQVLE 309