Pairwise Alignments

Query, 359 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 296 a.a., GGDEF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 97.1 bits (240), Expect = 5e-25
 Identities = 55/150 (36%), Positives = 85/150 (56%), Gaps = 3/150 (2%)

Query: 183 ALTGTLNRHQLDGFLKKCLRHRQLANESAVIAVIDIDHFKSVNDLYGHDTGDKVITQVVE 242
           ALTG  NRH     LK  +   Q    S  + V+D+D+FK +ND YGH  GD ++ +  +
Sbjct: 139 ALTGLGNRHYYSQSLKNAVARAQRKQGSVSLIVLDLDNFKKLNDKYGHKCGDYILKEFGD 198

Query: 243 IMNTHCRELDLLFRLGGDEFLLLFENTSLTDATLVMSHIGCRIQQTHYPYHA-KVTVSVG 301
           I+ +  R  D  FR+GGDEF+++ +  ++  A L+   I      TH  +H   V+ S+G
Sbjct: 199 IIRSSIRSTDQAFRIGGDEFVVIVQG-NIHAAGLLCERI-VSATNTHASFHQFGVSCSLG 256

Query: 302 LAEALRTDDPEQWFKRADQALYHSKKMGKN 331
            AEA  T + EQ +++AD+ LY +K  G+N
Sbjct: 257 AAEASETMEAEQLYEQADKTLYQAKASGRN 286