Pairwise Alignments

Query, 359 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 489 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  102 bits (253), Expect = 3e-26
 Identities = 57/174 (32%), Positives = 99/174 (56%), Gaps = 6/174 (3%)

Query: 168 IRKLHT--ELFYLSTRHALTGTLNRHQLDGFLKKCLRHR-QLANESAV-IAVIDIDHFKS 223
           +R  HT  EL +LST   LT   NRH  +        HR ++++E A+ + ++DID FK 
Sbjct: 315 LRLEHTNAELEFLSTHDPLTKLYNRHYFNRQFVH--EHRSEISSEGAICLVMLDIDFFKE 372

Query: 224 VNDLYGHDTGDKVITQVVEIMNTHCRELDLLFRLGGDEFLLLFENTSLTDATLVMSHIGC 283
           +ND  GH  GD ++ ++  ++    RE D++ R GG+EF++L   TS+     +   I  
Sbjct: 373 INDTLGHAVGDNILMELSGVLQHCVRETDVVARWGGEEFVILCHQTSIDLVKTLCQRIAA 432

Query: 284 RIQQTHYPYHAKVTVSVGLAEALRTDDPEQWFKRADQALYHSKKMGKNRVSFDE 337
            I+   +  + ++T S G+A+ +  +  +  F+RAD+ALY +K +G+N++  DE
Sbjct: 433 AIKDYRFSGNVQLTCSFGIAKLVNNEPMQSCFERADKALYQAKALGRNQICVDE 486