Pairwise Alignments

Query, 414 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 378 a.a., Multidrug resistance transporter, Bcr/CflA family from Pseudomonas fluorescens FW300-N2E2

 Score =  153 bits (386), Expect = 9e-42
 Identities = 105/356 (29%), Positives = 173/356 (48%), Gaps = 3/356 (0%)

Query: 40  MYVPSIGYMAQEFLVSPAALQAVMACYLIPYGLSQFVYGTLSDRIGRKPIIIAGLAIYII 99
           M +P+I  ++    VS A     ++ ++  + L   ++G LSDRIGR+PI++AGL ++ I
Sbjct: 1   MGLPAIADISHALGVSLAFASQTLSVFIFGFVLGPLLFGPLSDRIGRRPILLAGLVVFTI 60

Query: 100 GSLIALFAHQYSWFLIGSFVQGLGIGCGGAMSRTLSRDCFEGAELHKVNSLISMCLIFSP 159
             +   FA   +  L   F+QG   G    +   + RD FEG +  K+ S +++    +P
Sbjct: 61  AGIACTFAQDINLLLSARFLQGCAAGAAATLPIAIVRDQFEGVQARKLQSHLALVNNLAP 120

Query: 160 LVAPVLGGYLTESFGWRSSYLFLSLFAIAVVITMMTSMVETLP-ATARKKEPVLRSYHYV 218
           L+AP+LG  +     WR  Y  L++  + + +   TS  ET    ++     +L SY  V
Sbjct: 121 LIAPLLGSAILVVGNWRWIYAALAVCGVILWLRAQTSFDETATRKSSNAAASLLTSYLSV 180

Query: 219 LSDRRFQGYLICLVATFAGLAVFEAAAGVLLGGVLGLPATTVSLLFVLPIPGYLAGAWLS 278
           L  RRF    + +   FAG+  + AA+ ++    LG+ +   ++LF L   G +AG+W++
Sbjct: 181 LKSRRFLVSTLIMAFNFAGMFAYIAASPLVFMNNLGMTSAGFAVLFALTAMGTIAGSWVN 240

Query: 279 -NVIARHWREKTAMHVGLLAILTGSLVIMLPGLLGMTTALSLIGGATIYFLGAGILFPAA 337
             +I   + E   +   LLA L  SL +++   L +     L     +  L  GI+ P A
Sbjct: 241 GRLIHAGFAEHRVLGGALLASLLISLGLVVESQLAIYPIYILTALVVMSNLCTGIVMPNA 300

Query: 338 TTGALSPFPYHAGTGGAILGGMQNLGAGLATLFA-AMFPASDQLPLGIIMLLMSVL 392
           T  AL      AG G A+L   Q LG   A+L A A +       +  +ML  +VL
Sbjct: 301 THSALEDLSITAGAGAALLRATQMLGGACASLLAGAFYDGQTSHAMAGVMLACAVL 356