Pairwise Alignments

Query, 414 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., drug resistance transporter, Bcr/CflA family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  154 bits (388), Expect = 6e-42
 Identities = 110/366 (30%), Positives = 181/366 (49%), Gaps = 11/366 (3%)

Query: 40  MYVPSIGYMAQEFLVSPAALQAVMACYLIPYGLSQFVYGTLSDRIGRKPIIIAGLAIYII 99
           +Y+PS+  MA EF VS + +Q+ +  +L   G+ Q + G L+DR GR+P+ + G+ +Y  
Sbjct: 22  IYLPSMPTMAAEFAVSASEVQSTLVLFLFAMGVGQILIGPLADRYGRRPVALFGVLLYGA 81

Query: 100 GSLIALFAHQYSWFLIGSFVQGLGIGCGGAMSRTLSRDCFEGAELHKVNSLISMCLIFSP 159
            SL+A  A ++ W  I   +QGL       +  +  RDC+   E  K+ S ++  +   P
Sbjct: 82  SSLLAAAAIEFHWLQIARVLQGLAACSTSIVVFSAVRDCYSPKEGAKIYSYLNGAICVIP 141

Query: 160 LVAPVLGGYLTESFGWRSSYLFLSLFAIAVVITMMTSMVETLPATARKKEPVLR--SYHY 217
            +AP LGG L   FGWRS+++F++L+AI +++ +   + ET PA      P+ R   Y  
Sbjct: 142 ALAPTLGGLLAMQFGWRSTFVFMTLYAILMMLLVGYRLPETRPANTVSTGPLYRWSRYKP 201

Query: 218 VLSDRRFQGYLICLVATFAGLAVFEAAAGVLLGGVLGLPATTVSLLFVLPIPGYLAGAWL 277
           VLS+  F  Y    ++  A +  + + + V L G LG+     S LF L     +   + 
Sbjct: 202 VLSNTHFLFYAFACMSAMAAILSYVSYSPVWLIGHLGVSELAFSGLFGLNALVNIVACFA 261

Query: 278 SNVIARHWREK-TAMHVGLLAILTGSLVIMLPGL---LGMTTALSLIGGATIYFLGAGIL 333
           + V+ R    + TA+    L +L+   +I         GM  A + +    +  +G   L
Sbjct: 262 APVVIRKLGNRPTAILALALLVLSAVFIIAAQAFGPSAGMAAAFAFMLPMMLLCIGFAFL 321

Query: 334 FPAATTGALSPFPYHAGTGGAILGGMQNLG----AGLATLFAAMFPASDQLPLGIIML-L 388
              AT+ ALS F   AGT  A+LG +Q  G    AGL        P +  L +G   + L
Sbjct: 322 LGPATSMALSAFGERAGTATAMLGFIQMSGASVIAGLVQQTNLTAPYAVALVMGFFSIGL 381

Query: 389 MSVLAL 394
           +S++A+
Sbjct: 382 LSMMAI 387