Pairwise Alignments

Query, 414 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 382 a.a., drug resistance transporter, Bcr/CflA family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  111 bits (278), Expect = 3e-29
 Identities = 93/354 (26%), Positives = 161/354 (45%), Gaps = 24/354 (6%)

Query: 29  ILAAVGQATQTMYVPSIGYMAQEFLVSPAALQAVMACYLIPYGLSQFVYGTLSDRIGRKP 88
           +L    Q  +T+Y P++  +A+ F V  +A    ++ Y + + +  F +G L+D IGR+ 
Sbjct: 12  LLMMFPQIMETIYSPALPDIAEHFAVPISAAAQTLSVYFVAFAIGVFCWGRLADVIGRRK 71

Query: 89  IIIAGLAIYIIGSLIALFAHQYSWFLIGSFVQGLGIGCGGAMSRTLSRDCFEGAELHKVN 148
            ++AGL  Y IGS  AL    +S  L+   +   G   G  +++T+ RD + G EL KV 
Sbjct: 72  AMLAGLVCYAIGSAFALLVSDFSLLLMARVLSAFGAAVGSVITQTMMRDSYSGEELAKVF 131

Query: 149 SLISMCLIFSPLVAPVLGGYLTESFGWRSSYLFLSLFAIAVVITMMTSMVETLPA---TA 205
           S++ M    SP++  +LG  L+  +G++  ++ L   AI ++   + S+ ET PA   T 
Sbjct: 132 SVMGMSFGISPVIGLLLGSVLSAFWGYQGVFVVLMSSAIVLLFLSVKSLPETKPAHTQTI 191

Query: 206 RKKEPVLRSYHYVLSDRRFQGYLICLVATFAGLAVFEAAAGVLLGGVLGLPATTVSLLFV 265
              E  ++    +LSDR      + LVA F  +     +    +    GL      +  +
Sbjct: 192 AIGELAIK----MLSDRGIIKNTL-LVAAFNLMWFSYFSLAPFMFEAQGLSTLIFGMSGL 246

Query: 266 LPIPGYLAGAWLSNVIARHWREKTAMHVGLLAILTGSLVIMLPGLLGMTTALSLIGGATI 325
           L   G   G++ + V+         +      I   S + ++ G+       + IG   +
Sbjct: 247 LLGFGAFLGSYFNQVLLGRCCTSPRL------IRLASSIALVGGVGIWLLQSTFIGLNNV 300

Query: 326 YFLGA--------GILFPAATTGALSPFPYHAGTGGAILGGMQN--LGAGLATL 369
           YFL          GI  P   + AL+ +  +AG+ GA+ G      LGAGL  +
Sbjct: 301 YFLAPMLLIVIAYGIAIPNILSSALAGYRTYAGSAGALFGLFYYILLGAGLGVV 354