Pairwise Alignments

Query, 414 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 414 a.a., multidrug resistance protein D (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  315 bits (806), Expect = 2e-90
 Identities = 165/379 (43%), Positives = 236/379 (62%), Gaps = 3/379 (0%)

Query: 19  SVAKLTFFIAILAAVGQATQTMYVPSIGYMAQEFLVSPAALQAVMACYLIPYGLSQFVYG 78
           S  +L F +  + A GQ  QT++VP++  +AQ   V  + LQAVMACYL+ YGL QF+YG
Sbjct: 21  SATRLLFMLVFMVACGQMAQTIFVPALPLIAQGLAVDASKLQAVMACYLLAYGLFQFIYG 80

Query: 79  TLSDRIGRKPIIIAGLAIYIIGSLIALFAHQYSWFLIGSFVQGLGIGCGGAMSRTLSRDC 138
            LSDR GRK  ++ G+ I+IIG+L+A  A  ++  +  S +QGLG    GA+ R++ RD 
Sbjct: 81  PLSDRYGRKLPLLIGIGIFIIGALLATQATSFNQLICASLLQGLGTASAGALCRSIPRDH 140

Query: 139 FEGAELHKVNSLISMCLIFSPLVAPVLGGYLTESFGWRSSYLFLSLFAIAVVITMMTSMV 198
           + G  L K NS +SM ++F PLVAP LG   +  FGW++ Y  L  F + V + +     
Sbjct: 141 YFGDNLLKFNSYVSMAVVFLPLVAPFLGSLASAYFGWQAVYWVLFGFGVFVWLLLCFGFK 200

Query: 199 ETLPATARKKEPVLRSYHYVLSDRRFQGYLICLVATFAGLAVFEAAAGVLLGGVLGLPAT 258
           E+LP   R+++PVL SY +VL  R F+ YL  L+ATFAG+A FEA AGVL G  L L   
Sbjct: 201 ESLPKDKREQQPVLASYRHVLRHRSFRAYLFSLIATFAGIAAFEAIAGVLYGQYLQLTPF 260

Query: 259 TVSLLFVLPIPGYLAGAWLSNVIARHWREKTAMHVGLLAILTGSLVIMLPGLLGMTTALS 318
            VS  FV PIPGYL GA ++    R  + + ++  G+  +  G+L +++PGL  +    S
Sbjct: 261 MVSCYFVAPIPGYLLGALIA---GRQKQAQRSVFQGVALLGAGALFMLIPGLFQLVVGWS 317

Query: 319 LIGGATIYFLGAGILFPAATTGALSPFPYHAGTGGAILGGMQNLGAGLATLFAAMFPASD 378
           L+ G+ ++F GAG+LFP  T+ AL PFP  AG  GA+LGG+QN GAGLA L  ++ P   
Sbjct: 318 LLVGSILFFSGAGMLFPTLTSAALEPFPRQAGIAGALLGGLQNFGAGLAALTMSLVPMGG 377

Query: 379 QLPLGIIMLLMSVLALWGL 397
           QL +G++  +M +L +  L
Sbjct: 378 QLSIGLLSAVMVLLVIVAL 396