Pairwise Alignments

Query, 414 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 423 a.a., drug resistance transporter, Bcr/CflA family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  119 bits (299), Expect = 1e-31
 Identities = 94/377 (24%), Positives = 175/377 (46%), Gaps = 14/377 (3%)

Query: 26  FIAILAAVGQATQTMYVPSIGYMAQEFLVSPAALQAVMACYLIPYGLSQFVYGTLSDRIG 85
           ++A+L+ +G     MY+P+   +      SP+ +   + C+L    L Q +YG L  ++G
Sbjct: 19  YLALLSMLGFIATDMYLPAFKAIESSLNSSPSQVAMSLTCFLAGLALGQLIYGPLVSKLG 78

Query: 86  RKPIIIAGLAIYIIGSLIALFAHQYSWFLIGSFVQGLGIGCGGAMSRTLSRDCFEGAELH 145
           ++  ++ GLA++ + S+    +       I  F Q +G    G + + +  + ++  +  
Sbjct: 79  KRYALLIGLAVFALSSVAIANSDSVMMLNIARFFQAIGACSAGVIWQAIVVEQYDAEKAQ 138

Query: 146 KVNSLISMCLIFSPLVAPVLGGYLTESFGWRSSYLFLSLFAIAVVITMMTSMVETLPATA 205
            + S I   +  SP +AP+LG Y+   FGWR+  +F+SL  IA ++ +MT       +  
Sbjct: 139 GIFSNIMPLVALSPALAPILGAYILNEFGWRA--IFISLCVIAFLLVLMTLYFVPGKSKH 196

Query: 206 RKKEPVLRSYHYVLSDRRFQGYLI----CLVATFAGLAVFEAAAGVLLGGVLGLPATTVS 261
           +  +P   SY  +L + R+ G ++    C  A FA L V+      ++    G  AT + 
Sbjct: 197 QDIKPSAVSYGQILKNTRYLGNVVIFGACSGAFFAYLTVWP-----IVMEQHGYQATEIG 251

Query: 262 LLFVLPIPGYLAGAWLSNVIARHWREKTAMHVGLLAILTGSLV-IMLPGLLGMT-TALSL 319
           L F+     ++ G + S ++ +       ++V LL+I    +V I+L  LL  T T   L
Sbjct: 252 LSFIPQTIMFIVGGYASKLLIKRIGADKTLNV-LLSIFGICVVSIVLFTLLFKTITIFPL 310

Query: 320 IGGATIYFLGAGILFPAATTGALSPFPYHAGTGGAILGGMQNLGAGLATLFAAMFPASDQ 379
           +   +I     G ++P     AL  F  HA     +   +Q   A  A+   AM+    +
Sbjct: 311 LISFSILAAANGAIYPIVVNSALQQFTQHASKAAGLQNFLQITIAFGASSLVAMWANFGE 370

Query: 380 LPLGIIMLLMSVLALWG 396
           + +G  +L  S+L + G
Sbjct: 371 VAIGWGILCCSLLVILG 387