Pairwise Alignments

Query, 529 a.a., Na+/H+ antiporter from Vibrio cholerae E7946 ATCC 55056

Subject, 443 a.a., Na+/H+ antiporter NhaC (RefSeq) from Shewanella loihica PV-4

 Score = 61.6 bits (148), Expect = 6e-14
 Identities = 57/183 (31%), Positives = 91/183 (49%), Gaps = 14/183 (7%)

Query: 317 VYAALCSLAVSIVLSL-RLKLSAQTWLSTAPKGVMAMMPAIIILLFAWT-----IGGVVR 370
           V A L ++ +++++S  +L  S +T++       +  M  I +L  A+       GGV  
Sbjct: 49  VVAILPAIILALLISKEKLNQSIETFIGGIGHSNIIAMCLIYLLAGAFASVAKATGGVDA 108

Query: 371 DLQTGIYLASLTQGNLPVELLPALVFVLSCLMAFATGTSWGTFGIMLPLAGDIAAASDIS 430
            +  G+   SL   NL   LLP   FV++  +A A GTS GT   + P+A  +A  + I 
Sbjct: 109 TVALGL---SLVPSNL---LLPGF-FVIAAFIATAMGTSMGTIAAVAPIALGVAEEAQID 161

Query: 431 LMLPTLSAVLAGAVFGDHASPISSTSILSATGAGSHHIDHVVTQLPYAISAAMGALLGYL 490
           L L    AV++GA+FGD+ S IS T+I +    G    D     L +AI A++  L+ + 
Sbjct: 162 LALMA-GAVISGALFGDNLSIISDTTIAATRTQGCEMKDKFRENLIFAIPASLITLVVFT 220

Query: 491 AMG 493
             G
Sbjct: 221 LAG 223



 Score = 33.5 bits (75), Expect = 2e-05
 Identities = 39/192 (20%), Positives = 80/192 (41%), Gaps = 23/192 (11%)

Query: 5   NLAPYSDSVYSVIPPLLAVLLAITTRRVLLSLGAGIVAGAVMLNHFSPLSTVQYLFGKIS 64
           ++AP       VIP L  ++LA+    V + L  GI+   +    F+ L      FGK  
Sbjct: 228 DVAPQQIDFLKVIPYLTILVLAVAGLNVFVVLTVGILLAGI--TGFATLDYGLIQFGK-- 283

Query: 65  GLFWAEGAANSDNINMLLFMLLLGGLISLMTASGATRAFAVWAER----------KCKDR 114
            ++    A  S+   + +  +L+GGL +LM   G     +   E+          +   R
Sbjct: 284 DIY----AGFSNMQEIFILSMLVGGLAALMQQQGGLAFVSKQIEKLIVRFSSAKGEASTR 339

Query: 115 RSAKALTGLMVF--AFFIDDFFHSLSVGAICRPVTDRFQISRAKLAYLLDSTAAPVCVIT 172
            S   + G++        ++    +  G I + + ++ +++  + A +LD  +   C+I 
Sbjct: 340 ASELGMAGIVALTNTCVANNTVSIVVTGDIAKDLAEKHEVTPKRAASILDIFS---CIIQ 396

Query: 173 PISSWGAYIIAL 184
            +  +GA  + +
Sbjct: 397 GLIPYGAQALLI 408