Pairwise Alignments

Query, 529 a.a., Na+/H+ antiporter from Vibrio cholerae E7946 ATCC 55056

Subject, 460 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  194 bits (492), Expect = 8e-54
 Identities = 147/496 (29%), Positives = 248/496 (50%), Gaps = 66/496 (13%)

Query: 15  SVIPPLLAVLLAITTRRVLLSLGAGIVAGAVMLNHFSPLSTVQYLFGKISGLFWAEGAAN 74
           S+IPP++ ++LAI  RR +LSL  G V G ++L+    L+       K+           
Sbjct: 8   SLIPPVVVLVLAIWLRRPILSLIIGAVTGFLLLDPTQVLNNFARTSLKVM---------T 58

Query: 75  SDNINMLLFML-LLGGLISLMTASGATRAFAVWAERKCKDRRSAKALTGLMVFAFFIDDF 133
            + I  L+ +    G LI+L+  +G   AF   A +  K  RS+  +T ++    FIDD+
Sbjct: 59  DETIGWLILVCGCFGALIALLVRTGGALAFGRNALKFAKGPRSSLFMTFILGIVIFIDDY 118

Query: 134 FHSLSVGAICRPVTDRFQISRAKLAYLLDSTAAPVCVITPISSWGAYIIALIGGILAAHE 193
            ++L+VG   + VTD+F++SR  LAY++DSTAAPVCV+ P+S+W  +     GG+L  + 
Sbjct: 119 LNALTVGETMKRVTDKFKVSREMLAYVVDSTAAPVCVLVPLSTWAVF----FGGLLVDNG 174

Query: 194 M-TEISAISAFVQMIPMNLYAVFTLLMVLAV-IFLPMDIGPMRQHEAWAREGKLWDESKG 251
           +  E   IS ++Q IP  LYA   + MVL V + +   IGPM++ +  A  G      + 
Sbjct: 175 VAAEGQGISVYMQAIPYMLYAWLAVAMVLLVSLGIVPAIGPMKKAQLRAANG------EP 228

Query: 252 RPAGLDMEGGETA-----------------RGTMIDMVLPIAVLTITTLIFMIQTGNAVL 294
             A +D++  +T+                 +G + + ++PI +L   T+ F I     +L
Sbjct: 229 AEAQVDLDQVQTSDEYAIAAIEEEFKHADNQGKLHNFLVPILLLVGFTVYFDIDVWKGLL 288

Query: 295 AANGEAFSLIGALENTNVAQSLVYAALCSLAVSIVLSLRLKLSAQTWLSTAPKGVMAMMP 354
           A              T V     YA    + +S ++   +             G  +M+P
Sbjct: 289 A--------------TLVITLPYYAVQRLMPLSEMMDQMI------------DGFKSMLP 322

Query: 355 AIIILLFAWTIGGVVRDLQTGIYLASLTQGNLPVELLPALVFVLSCLMAFATGTSWGTFG 414
           AI  ++ A+    V   +    Y+       +  +LLPA+VF+   ++AFATG+SWG F 
Sbjct: 323 AIGTVIAAFVFKDVCDAMLLPQYVIESLSPFMTPQLLPAVVFLSMAILAFATGSSWGIFA 382

Query: 415 IMLPLAGDIAAASDISLMLPTLSAVLAGAVFGDHASPISSTSILSATGAGSHHIDHVVTQ 474
           + +P+   +A +    + L  + A+L+ + FG  A   S +++L+A G+G + + H VTQ
Sbjct: 383 VTIPIVMPLAQSVGADIPL-VIGALLSASSFGSQACFYSDSTVLAAQGSGCNLVSHAVTQ 441

Query: 475 LPYAISAAMGALLGYL 490
           LPYA+ AA+ A  G++
Sbjct: 442 LPYALIAAVIAFFGFI 457