Pairwise Alignments

Query, 529 a.a., Na+/H+ antiporter from Vibrio cholerae E7946 ATCC 55056

Subject, 507 a.a., hypothetical Na+/H+ antiporter (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  298 bits (762), Expect = 4e-85
 Identities = 180/506 (35%), Positives = 284/506 (56%), Gaps = 19/506 (3%)

Query: 12  SVYSVIPPLLAVLLAITTRRVLLSLGAGIVAGAVMLNHFSPLSTVQYLFGKISGLFWAEG 71
           ++ +++P  L ++LA+  RR L++LG GI++GA+++ HF  + +V YL       F+++ 
Sbjct: 4   NLLAILPLFLTLVLALWLRRTLVALGVGILSGALIIAHFDIVQSVSYLLEIGVKQFYSQD 63

Query: 72  AANSDNINMLLFMLLLGGLISLMTASGATRAFAVWAERKCKDRRSAKALTGLMVFAFFID 131
           A    ++N+L  MLLLG +  L+  SGA   F  W  R+ +  R A+    L+ +  FID
Sbjct: 64  AWQWWHLNVLTAMLLLGSMTQLLARSGAVGLFGDWLYRRIRTGRQARVGVVLLGWLVFID 123

Query: 132 DFFHSLSVGAICRPVTDRFQISRAKLAYLLDSTAAPVCVITPISSWGAYIIALIGGILAA 191
             F  L+VG +C+P++ R+ I + +LAYL+DS A+P+C + P SSWG Y++AL+ G+   
Sbjct: 124 GIFSCLAVGHVCQPLSQRYGIRQEQLAYLVDSNASPLCSLLPFSSWGPYVMALLAGL--- 180

Query: 192 HEMTEISAISAFVQMIPMNLYAVFTLLMVLAVIFLPMDIGPMRQHEAWAREGKLWDESKG 251
                +SA+ AF+++   N YA+ TL + L V +  +   P+      A E     +   
Sbjct: 181 -SFLPVSALEAFIEVALSNFYAITTLGLSLIVAWFGVGFRPIESAVLMAAEPSKVTQMDI 239

Query: 252 RPAGLDMEGGETARGTMIDMVLPIAVLTITTLIFMIQTGNAVLAANGEAFSLIGALENTN 311
            P         +++G    + +P+  L   ++   + +G    A    A+ +   L + +
Sbjct: 240 APP--------SSQGNPWLLAIPMLTLLCASVGLTLWSG----AQQVPAWDISAWLASAD 287

Query: 312 VAQSLVYAALCSLAVSIVLSLRLKLSAQTWLSTAPKGVMAMMPAIIILLFAWTIGGVVRD 371
           +  ++  A L S  V++ L +    S    L     GV  +  AI ILL  W IG V++D
Sbjct: 288 IGAAMRDACLLSTLVTLGLLIMSGRSIGKLLGDLAHGVRMIAFAIAILLCTWMIGAVIQD 347

Query: 372 LQTGIYLASLTQGNLPVELLPALVFVLSCLMAFATGTSWGTFGIMLPLAGDIAAASDISL 431
           L     LA   +  L   LL A +F+L  +MAFATG+SWGTF IM+P+ G+IA   D SL
Sbjct: 348 LGVASLLADWAKWYLSPSLLVAGMFLLCAIMAFATGSSWGTFAIMIPIGGEIAHNMDASL 407

Query: 432 MLPTLSAVLAGAVFGDHASPISSTSILSATGAGSHHIDHVVTQLPYAISAAMGALLGYLA 491
           +LP LSAV+AG+VFGDH SPIS TS+LSAT +G    DHVVTQLP+A+ AA  AL+G+  
Sbjct: 408 LLPVLSAVMAGSVFGDHCSPISDTSVLSATSSGCLPHDHVVTQLPFALIAAFAALVGFQL 467

Query: 492 MGLLHS---VWAGLAASSVWFVLFCA 514
           + L  +   VW G+  +S+  ++  A
Sbjct: 468 VNLSVATVFVWLGVIGTSLGLLVLMA 493