Pairwise Alignments

Query, 529 a.a., Na+/H+ antiporter from Vibrio cholerae E7946 ATCC 55056

Subject, 445 a.a., Na+/H+ antiporter NhaC (RefSeq) from Shewanella sp. ANA-3

 Score = 60.8 bits (146), Expect = 1e-13
 Identities = 63/200 (31%), Positives = 96/200 (48%), Gaps = 17/200 (8%)

Query: 317 VYAALCSLAVSIVLSL-RLKLSAQTWLSTAPKGVMAMMPAIIILL-----FAWTIGGVVR 370
           V A L ++ +++VLS  +L  +  T++       +  M  I +L       A   GGV  
Sbjct: 51  VIAILPAIILALVLSKQKLNQAIDTFIGGIGHSNIIAMCLIYLLAGGFAAVAKATGGVDA 110

Query: 371 DLQTGIYLASLTQGNLPVELLPALVFVLSCLMAFATGTSWGTFGIMLPLAGDIAAASDIS 430
            +  G+   SL   NL   LLP   FV++  +A A GTS GT   + P+A  +A  + I 
Sbjct: 111 TVALGL---SLIPSNL---LLPGF-FVIAAFIATAMGTSMGTIAAVAPIALGVADQAQID 163

Query: 431 LMLPTLSAVLAGAVFGDHASPISSTSILSATGAGSHHIDHVVTQLPYAISAAMGALLGYL 490
             L    AV++GA+FGD+ S IS T+I +    G    D     L +AI A   +LL ++
Sbjct: 164 YALMA-GAVMSGALFGDNLSIISDTTIAATRTQGCDMKDKFRENLIFAIPA---SLLTFV 219

Query: 491 AMGLLHSVWAGLAASSVWFV 510
           A  +     A LAA  + F+
Sbjct: 220 AFVIAGQGQADLAAQDIDFI 239



 Score = 32.3 bits (72), Expect = 4e-05
 Identities = 48/210 (22%), Positives = 85/210 (40%), Gaps = 29/210 (13%)

Query: 5   NLAPYSDSVYSVIPPLLAVLLAITTRRVLLSLGAGI-VAGAVMLNHFSPLSTVQYLFGKI 63
           +LA        VIP L  ++LA+    V + L  GI +AGA     F  +      FGK 
Sbjct: 230 DLAAQDIDFIKVIPYLTILVLAVAGLNVFVVLTLGILLAGAA---GFLTMDYGVIQFGK- 285

Query: 64  SGLFWAEGAANSDNINMLLFMLLLGGLISLMTASGA------------TRAFAVWAERKC 111
             ++    A  S+   + +  +L+GGL +LM   G             TR      E  C
Sbjct: 286 -DIY----AGFSNMQEIFILSMLVGGLAALMQQQGGLAFVSKQIEKLITRFSKAQGEASC 340

Query: 112 KDRRSAKALTGLMVFAFFIDDFFHSLSVGAICRPVTDRFQISRAKLAYLLDSTAAPVCVI 171
           +      A    +  +   ++    +  G I + + ++  +S  + A +LD  A   C+I
Sbjct: 341 RAAELGMAGIVAVTNSCVANNTVSIVVTGDIAKDLAEKHGVSPKRAASVLDIFA---CII 397

Query: 172 TPISSWGAYIIALIGGILAAHEMTEISAIS 201
             +  +GA  +     I +   +T ++A+S
Sbjct: 398 QGLIPYGAQALL----IASTFSITPLAAVS 423