Pairwise Alignments

Query, 648 a.a., ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 547 a.a., sensor histidine kinase (RefSeq) from Shewanella amazonensis SB2B

 Score =  161 bits (408), Expect = 6e-44
 Identities = 91/276 (32%), Positives = 157/276 (56%), Gaps = 10/276 (3%)

Query: 365 QDLEQQVANRTQDLALSLTRLQETQTQLIESEKLAALGGLVAGVAHEVNTPLGIAVTATS 424
           ++L +QV  RT +L  SL  L+  Q  L+E EK+AALGGLV+GVAHE+NTP+GI +TA S
Sbjct: 256 EELAKQVKERTMELEQSLLILKRAQEALVEQEKMAALGGLVSGVAHEINTPIGICLTAAS 315

Query: 425 VIQETRESLLNAFNQQTLTSQQFAELMERMTQSTLMLETNLNRAARLVRDFKQTAVDQVS 484
                 + L++  + +  T ++   ++E   QS  ++ +N+ RA+ L++ FK  A +   
Sbjct: 316 TQLAHIDELISLIHSEEATLEEINAILEEYQQSCELIVSNITRASNLIQKFKTIAAENSH 375

Query: 485 ESRSQFHVKQVLDALMASLHSETRKIPVTPQLHGE----DSVMMNSLPGVLTQIMTNLVM 540
           E+  Q  + Q    L   +H  T+ I      + E    D + + +   +L QI++NL+ 
Sbjct: 376 EAHEQIPIAQ----LCRDIHDSTQLIYAPTMANMELDIADELQVETNYSLLNQILSNLMS 431

Query: 541 NSVNHAFAETAQPEIDIHFYQKDQQIMIEYRDNGCGVAKELHQKIFEPFFTTKRGQGGSG 600
           N   HAFA+  +    +  Y +++++++   DNG G+A ++ + +FEPF+TT R +GG+G
Sbjct: 432 NIYAHAFAQGRENLFRVEAYLENRRLVVRLEDNGPGIAADVAEHMFEPFYTTIRARGGTG 491

Query: 601 LGLNLVFNLVKQKLHGQLAFSSEPG-HGVHYVITLP 635
           LGL+  FN     L G + +  +    G  +V+++P
Sbjct: 492 LGLSAAFN-AATLLKGSVRYEGKSTLGGACFVLSIP 526



 Score =  103 bits (256), Expect = 3e-26
 Identities = 52/190 (27%), Positives = 104/190 (54%), Gaps = 3/190 (1%)

Query: 16  SRIGRRIILIMVILSGAVTLAMTITQTFIDYNREFNNVQARHDEIQTIHAELLASSLWNY 75
           S+IGRR+++ +V+ S  +TL  T  Q F DYN + N +      I+ ++ ++LA+S+W  
Sbjct: 11  SKIGRRLMISIVLFSSLITLITTGYQLFNDYNGDLNRIDRAFSNIEKVNLDVLAASIWVI 70

Query: 76  DLVVLTQRLEGLVNLPNVDYMKI-TSGDYHFSAGEPVTSMALNSEIALEYTNPDTQVTEN 134
           D  ++  +LEGL+ LP++ Y+ I      H+S G P+    +    +L Y +    +  +
Sbjct: 71  DERLINTQLEGLIQLPDITYISIDDDSGQHWSRGAPIDKNFIEKVFSLNYNSGSESI--S 128

Query: 135 IGTLYVESDAQGIYNYLIRQFLLTLAVNALKTAIVCYLILLIFHASVNQRIFAIAQFLRR 194
           +G L + +D   +Y  +  + ++ L  NA+KT +V  +IL++   ++ + +  +A + + 
Sbjct: 129 VGKLTILADLNAVYERIYDKAIIILLSNAIKTFLVAGMILILVWLNITRHLNTLAAYCQD 188

Query: 195 YNPRHPKKPL 204
            +  H  +PL
Sbjct: 189 ISVEHEYQPL 198