Pairwise Alignments

Query, 648 a.a., ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 546 a.a., integral membrane sensor signal transduction histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  147 bits (372), Expect = 9e-40
 Identities = 89/247 (36%), Positives = 139/247 (56%), Gaps = 4/247 (1%)

Query: 366 DLEQQVANRTQDLALSLTRLQETQTQLIESEKLAALGGLVAGVAHEVNTPLGIAVTATSV 425
           +L +QV  RTQ+L  SL  L+  Q  L+E EK+AALGGLV+GVAHE+NTP+GI +TA S 
Sbjct: 258 ELARQVKERTQELEQSLLVLKRAQQVLVEQEKMAALGGLVSGVAHEINTPIGICLTAAST 317

Query: 426 IQETRESLLNAFNQQTLTSQQFAELMERMTQSTLMLETNLNRAARLVRDFKQTAVDQVSE 485
                E L+   + +  T ++   ++E   QS  ++ +N+ RA+ L++ FK  A +Q  E
Sbjct: 318 QLIHIEELIKLIHSENATLEEINAILEEYQQSCELIISNITRASSLIQKFKTIAAEQSLE 377

Query: 486 SRSQFHVKQVLDALMASLH--SETRKIPVTPQLHGEDSVMMNSLPGVLTQIMTNLVMNSV 543
            +   ++KQ L+    S+      +   V  ++  + +++ N    +  QI+TNL  N+ 
Sbjct: 378 DKRSINLKQGLEEHHESMRFIYGDKLAEVEYRVDPDLNILTNL--SLFKQIVTNLFSNAY 435

Query: 544 NHAFAETAQPEIDIHFYQKDQQIMIEYRDNGCGVAKELHQKIFEPFFTTKRGQGGSGLGL 603
            H F   +Q +I I        + I  +D+G G+  E    IFEPF+TT R +GG+GLGL
Sbjct: 436 AHGFKGRSQGKIRIDAEVDAGMLKICIQDDGPGIDSEATGHIFEPFYTTTRSEGGTGLGL 495

Query: 604 NLVFNLV 610
           +  FN V
Sbjct: 496 SAAFNAV 502



 Score =  102 bits (253), Expect = 6e-26
 Identities = 59/235 (25%), Positives = 121/235 (51%), Gaps = 6/235 (2%)

Query: 16  SRIGRRIILIMVILSGAVTLAMTITQTFIDYNREFNNVQARHDEIQTIHAELLASSLWNY 75
           S IGR++ L +++ S  +TL  T  Q   DY  + N +  + D I+ ++ ++LA+S+W  
Sbjct: 11  SPIGRKLTLSIILFSSLITLLTTGFQLINDYRSDVNRITRQFDSIEKVNLDVLAASIWVI 70

Query: 76  DLVVLTQRLEGLVNLPNVDYMKI-TSGDYHFSAGEPVTSMALNSEIALEYTNPDTQVTEN 134
           D  ++  +++GL+ LP++ Y++I      H+ AG       +     L Y++ +  +  +
Sbjct: 71  DERLINTQIDGLIQLPDITYIEIDDDSGQHWQAGTATPENTIERSFKLVYSSGNENI--D 128

Query: 135 IGTLYVESDAQGIYNYLIRQFLLTLAVNALKTAIVCYLILLIFHASVNQRIFAIAQFLRR 194
           +GTL V++D + +Y  L+ + ++ L  NA+KT IV   IL +    V + +  ++ + + 
Sbjct: 129 VGTLLVQADLRVVYEKLLDRAIVILLSNAIKTFIVAGFILFLVWYLVTRHLHKLSDYSQN 188

Query: 195 YNPRHPKKPLQLPYNPWIMEKNDELQWLGDETNRIANNVTTLYRTIKSEQERLED 249
            N     +PL    +     KNDE   + +  N++   +   +  IK+ +  L++
Sbjct: 189 INLEGEFEPLVFVKD---SHKNDEFWLVAEAINKMQQQLRRSFDDIKASKLELQE 240