Pairwise Alignments

Query, 648 a.a., ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1226 a.a., PAS/PAC sensor signal transduction histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  227 bits (579), Expect = 2e-63
 Identities = 139/416 (33%), Positives = 224/416 (53%), Gaps = 14/416 (3%)

Query: 236  LYRTIKSEQERLEDFAQAASDWLWETNC-HGELIYSSEAMSTALAIEEDSKPLIVSIAP- 293
            L+   +SEQ RL+     + D  W+ N  HG    ++  +      +E  K +   + P 
Sbjct: 809  LHEVAESEQ-RLQLALWGSGDEFWDWNIVHGNATRTNTFLKYPEQEQELKKTIATCVHPD 867

Query: 294  --LQSSTALMNCLLKQQDFSNCEVELTLSDGTQAYLLFQGIARYADEQFLGFR--GTAIN 349
               + S     C+  Q D  +        DG   ++L +G     DE     R  GT  N
Sbjct: 868  DIPKVSRVAKECINDQIDKFSLTYRGLAPDGEWLWVLNRGQVVERDEAGKAVRIAGTIKN 927

Query: 350  ITSLKLAQLSLEIMNQDLEQQVANRT-------QDLALSLTRLQETQTQLIESEKLAALG 402
            I   K  + +L  +NQ LEQ+V  RT        +L  +L  L+ TQ +L++ EK+AALG
Sbjct: 928  IQQQKETEHALRELNQRLEQRVNERTLELQQRNDELKHTLDELEHTQGELMDKEKMAALG 987

Query: 403  GLVAGVAHEVNTPLGIAVTATSVIQETRESLLNAFNQQTLTSQQFAELMERMTQSTLMLE 462
            GLVA + HEVNTP+GI+VTA S +QE+ +     + +  +T + F +    + +   ++ 
Sbjct: 988  GLVASITHEVNTPIGISVTAASHLQESVKHFDQLYRRGEITEEDFEQYQNEVAECCRLIL 1047

Query: 463  TNLNRAARLVRDFKQTAVDQVSESRSQFHVKQVLDALMASLHSETRKIPVTPQLHGEDSV 522
             NL RA++L+  FKQ +VDQ  E   +F +   L+ +  SL+    + P        + +
Sbjct: 1048 ANLERASKLIASFKQVSVDQSHEDVREFDLHAYLEEIFISLNPMLSRTPHEYSYQCPEKL 1107

Query: 523  MMNSLPGVLTQIMTNLVMNSVNHAFAETAQPEIDIHFYQKDQQIMIEYRDNGCGVAKELH 582
            ++ S PG   QI++NL  NSV HA+ +    ++ +   + DQ I I Y+D+GCG+++E+ 
Sbjct: 1108 IIQSTPGAFYQIVSNLFNNSVIHAYPDGKSGKLSLDVARTDQGICITYQDDGCGMSQEVQ 1167

Query: 583  QKIFEPFFTTKRGQGGSGLGLNLVFNLVKQKLHGQLAFSSEPGHGVHYVITLPQAL 638
             ++F+PFFTTKRG+GGSGLG+N+V N+V Q L G+++  S+ G G  ++I LP +L
Sbjct: 1168 AQVFQPFFTTKRGKGGSGLGMNIVSNIVTQVLKGEISIDSQEGRGSTFIIHLPDSL 1223