Pairwise Alignments

Query, 648 a.a., ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 543 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  160 bits (405), Expect = 1e-43
 Identities = 86/259 (33%), Positives = 148/259 (57%), Gaps = 1/259 (0%)

Query: 365 QDLEQQVANRTQDLALSLTRLQETQTQLIESEKLAALGGLVAGVAHEVNTPLGIAVTATS 424
           ++L +QV  RTQ+L  SL  L+  Q  L+E EK+AALGGLV+GVAHE+NTP+GI +TA S
Sbjct: 256 EELARQVKERTQELEQSLAALKRAQQVLVEQEKMAALGGLVSGVAHEINTPIGICLTAAS 315

Query: 425 VIQETRESLLNAFNQQTLTSQQFAELMERMTQSTLMLETNLNRAARLVRDFKQTAVDQVS 484
                 E L+   + +  T  +   +++   QS  ++  N+ +A+ L++ FK  A+D+  
Sbjct: 316 AQLSHIEELIELIHSEQATLDEINAILDEYQQSCELIVRNITKASSLIQKFKTIAIDRSH 375

Query: 485 ESRSQFHVKQVLDALMASLHSETRKIPVTPQLHGEDSVMMNSLPGVLTQIMTNLVMNSVN 544
           E     +++  L  ++ S       +    QLH + S+ + +   +L QI++N++ N+  
Sbjct: 376 EEHQCINLQTQLKQIVESSLLMHPTLKAQTQLHVDPSLNIQTNASLLNQIVSNILSNAYT 435

Query: 545 HAFAETAQPEIDIHFYQKDQQIMIEYRDNGCGVAKELHQKIFEPFFTTKRGQGGSGLGLN 604
           HAF +    +I I    + + + I  ++NG  +  E+ + +FEPFFTT R +GG+GLGL+
Sbjct: 436 HAFQDREDNQILISTNIEQEVVNISIQNNGIAIPPEIAEHMFEPFFTTNRSKGGTGLGLS 495

Query: 605 LVFNLVKQKLHGQLAFSSE 623
             FN     L G +++ ++
Sbjct: 496 AAFN-AATLLKGTMSYQAD 513



 Score =  103 bits (256), Expect = 3e-26
 Identities = 64/234 (27%), Positives = 114/234 (48%), Gaps = 7/234 (2%)

Query: 16  SRIGRRIILIMVILSGAVTLAMTITQTFIDYNREFNNVQARHDEIQTIHAELLASSLWNY 75
           S IGR + L +V+ S  +TL  T  Q   DY  + + +      I+  + ++LA+S+W  
Sbjct: 11  SPIGRHLTLSIVLFSSLITLITTAYQLINDYRGDVSRIDRVFSNIEKANLDVLAASIWVI 70

Query: 76  DLVVLTQRLEGLVNLPNVDYMKI-TSGDYHFSAGEPVTSMALNSEIALEYTNPDTQVTEN 134
           D  ++  +L GL+ LP+++Y+ I       ++AG    +  LN    L Y +P   +  N
Sbjct: 71  DERLINTQLNGLIQLPDINYISIKDDSGQSWNAGNSKPTHTLNKIFPLVYKSPTDNI--N 128

Query: 135 IGTLYVESDAQGIYNYLIRQFLLTLAVNALKTAIVCYLILLIFHASVNQRIFAIAQFLRR 194
           +GTL V+ D   IY  L  + +L L  N +KT +V   IL +   ++ + +  ++ + +R
Sbjct: 129 VGTLEVQVDMDAIYQRLYDKAILILLSNGIKTFLVAGFILFLVWYNITKHLDKLSNYCKR 188

Query: 195 YNPRHPKKPLQLPYNPWIMEKNDELQWLGDETNRIANNVTTLYRTIKSEQERLE 248
            N     +PLQ        EK DE + + D  N +   +   +  +KS +  L+
Sbjct: 189 INLDADFEPLQFERK----EKADEFKQVADAINSMQGQLRNSFEALKSSKAELQ 238