Pairwise Alignments

Query, 522 a.a., transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 525 a.a., response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  404 bits (1038), Expect = e-117
 Identities = 208/519 (40%), Positives = 330/519 (63%), Gaps = 26/519 (5%)

Query: 21  AGEKERVVMHSQEPWCVLLVDDDEQMHQITRLALTGFKFQNRPLELISVLSGLEARKVMA 80
           +G+K      S  PW +LLVDD+  +H +T+LAL+ FK   R L  I+  S  +A++ + 
Sbjct: 13  SGKKTTETSASLAPWKILLVDDEPDVHTVTKLALSRFKLDGRALSFINAYSAEQAKEFLI 72

Query: 81  ERSDIALALVDVVMETEHAGLDLVRYIREELQNRQVRLVLRTGQAGQAPEDRVIKEYEID 140
              D+A+A +DVVMET+HAGL+LV++IRE+ +N+ +RL+LRTGQ GQAPE+ VI  Y+I+
Sbjct: 73  NEQDLAIAFIDVVMETDHAGLELVKWIREDHKNKTIRLILRTGQPGQAPEEDVIVNYDIN 132

Query: 141 DYKEKTELTTQKLRTLLYSMLRAYRDLCLIE-------DQKLGLSHVIEASANVQNTKSL 193
           DYK K+EL ++KL T +YS LR+YRD+  IE       + + GL  V+EA++ +   ++L
Sbjct: 133 DYKAKSELDSRKLMTSVYSALRSYRDIMEIEQARRAQVNHRKGLERVLEATSGLFELRTL 192

Query: 194 QSYATAVLNQLTSLLKLHASAFYCVATPCPDSEKCNAL-TVATTAERVEL--------YV 244
             +A  +L Q+ +LL L +               CNA+  ++   E  ++        + 
Sbjct: 193 HRFADGLLTQVATLLNLDSETLLLT---------CNAMDAISGHMESTDIKILAGTGQFA 243

Query: 245 ESPF-KGLPEDVQRRCKEVLSQRTTRDYGDAYVFFKQDERGVDSVLYVGFEQELSELDRK 303
           E+P  K LP  + +  +  L+ +      + +V +   + G+ ++LY+    ++ +LD+K
Sbjct: 244 ETPINKALPSHIDKLLRSALAHKRCLYEDNCFVGYFPTKSGLINLLYMDGIDKIDDLDKK 303

Query: 304 LLEIYMYNIGLTFENINLMVDLRETSKELVYNLANAVEARSRETGAHVQRVALYCERLAH 363
           L++I+  N+G+ FEN+ L  ++ +T  EL+  L + VE+RS+E   HV+R+A YC +LA 
Sbjct: 304 LIDIFAINVGVAFENLLLNQEVEDTQSELILRLGDVVESRSKEAANHVKRMAEYCAQLAL 363

Query: 364 LYGLAESEADMIKNASPLHDVGKVAIPDSILHKPGKLDAQEWAIMQKHVEYGVEILNRSK 423
           + GL+ESEAD+++ ASP+HD+GK+AIPD++L KPGKLD QEW++M++H   G +IL  S+
Sbjct: 364 IAGLSESEADLLRRASPMHDIGKIAIPDAVLLKPGKLDDQEWSVMRQHPTIGYQILANSE 423

Query: 424 RRLMQVAKEIAATHHEKWDGSGYPNRLQGDDIPISGRITAIADVFDALGAKRSYKDPWTD 483
           R +++ A  IA  HHEK+DGSGYP  L+ D I I  RI AIADVFDAL   R YK  W  
Sbjct: 424 RPILKAAAIIALQHHEKYDGSGYPANLKQDQIHIFARIVAIADVFDALSHARCYKAAWPL 483

Query: 484 EQIREELMAQKGRHFEPKLVELLLEHWDEFIAIRASLPD 522
           EQ+ +E+    G+HF+P L+EL +++ + F+ ++ +  D
Sbjct: 484 EQVIDEMRKGAGKHFDPDLLELFIDNIEIFVKVKENWKD 522