Pairwise Alignments

Query, 522 a.a., transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 422 a.a., HD domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  134 bits (337), Expect = 7e-36
 Identities = 79/204 (38%), Positives = 121/204 (59%), Gaps = 14/204 (6%)

Query: 333 VYNLANAVEARSRETGAHVQRVALYCERLAHLYGLAES-----EADMIKNASP---LHDV 384
           V  LA   E R  ETGAH+ R+  Y + LA    LAE+     + D I++ S    LHD+
Sbjct: 207 VLGLAKLAEYRDNETGAHLLRMRQYSKMLAAQRMLAENPPPELDEDFIQDISLSAILHDI 266

Query: 385 GKVAIPDSILHKPGKLDAQEWAIMQKHVEYGVEILNR-----SKRRLMQVAKEIAATHHE 439
           GKV I D+IL KPG+L  +E+  ++ H   G ++L        +   + + ++IA+ HHE
Sbjct: 267 GKVGIADAILLKPGRLTPEEFEQIKAHPVIGGQVLASLLEYAPRCTFITMGRDIASGHHE 326

Query: 440 KWDGSGYPNRLQGDDIPISGRITAIADVFDALGAKRSYKDPWTDEQIREELMAQKGRHFE 499
           KWDGSGYP  L+ ++IP+S RI A+ DV+DAL + R YK P++ E+    ++  + +HF+
Sbjct: 327 KWDGSGYPLGLKEENIPLSARIVALVDVYDALTSPRCYKRPFSHEEALALILEGRAKHFD 386

Query: 500 PKLVELLLEHWDEF-IAIRASLPD 522
           P LV+  ++   EF +  +ASL D
Sbjct: 387 PALVDCFMQIHTEFEVLSKASLHD 410